Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001423-TA|BGIBMGA001423-PA|IPR002219|Protein kinase C,
phorbol ester/diacylglycerol binding, IPR000159|RA, IPR001609|Myosin
head, motor region, IPR000048|IQ calmodulin-binding region,
IPR000198|RhoGAP, IPR008936|Rho GTPase activation protein
         (2027 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    26   2.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   9.3  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   9.3  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 20/65 (30%), Positives = 27/65 (41%)

Query: 292 ENGMVHGAVVQKYLLEKSRICSQGRNERNYHVFYYLLAGASEQEREQLHLLSVDKYNYLS 351
           +N ++  A   K L+ K RI     +ERN  +   L    SE E       S+D    LS
Sbjct: 363 DNALLFSANSTKKLIVKIRIDIDKEDERNEIISSALKLSQSELEITACKFFSIDNALLLS 422

Query: 352 KTGCS 356
             G S
Sbjct: 423 ICGAS 427


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
            protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 1053 PPPIDRYEHDGKAPHAL 1069
            PPPI  +E  G  PH L
Sbjct: 154  PPPITSFETSGLRPHLL 170


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
            transcription factor protein.
          Length = 193

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 23/138 (16%), Positives = 56/138 (40%), Gaps = 4/138 (2%)

Query: 1043 KSLPEI--RKKLPPPIDRYEHDGKAPHALTKAELYKLQETCSETYKTCIDKQLLEKKREN 1100
            K LP +   +++PPP   Y  +    +      +    +  ++     +  +   +KR++
Sbjct: 9    KFLPTVLPHQEVPPPFGYYHEEPPLFYEERPDFVAPYIKVEADEEAPVLKSRSFGRKRKS 68

Query: 1101 ISIEEKTSPPLNHKDRKTITAEKNTKINNKIDSSIIENRMLSEDKRRYPQGGVTLPNKIT 1160
            IS +E+ S    HK R+          + ++ +++ E +        +     ++P    
Sbjct: 69   ISSDEENSFQGKHKSRRKAPQSFEDIQHQRVMANVRERQRTQSLNEAFASLRKSIPT--M 126

Query: 1161 PEDLANEMLWLRMDQNYI 1178
            P D  +++  L++   YI
Sbjct: 127  PSDKLSKIQTLKLAARYI 144


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,609
Number of Sequences: 317
Number of extensions: 17787
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 4
length of query: 2027
length of database: 114,650
effective HSP length: 67
effective length of query: 1960
effective length of database: 93,411
effective search space: 183085560
effective search space used: 183085560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)