GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001423-TA|BGIBMGA001423-PA|IPR002219|Protein kinase C,
phorbol ester/diacylglycerol binding, IPR000159|RA, IPR001609|Myosin
head, motor region, IPR000048|IQ calmodulin-binding region,
IPR000198|RhoGAP, IPR008936|Rho GTPase activation protein
         (2027 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              27   2.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    26   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   4.8  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    25   8.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   8.4  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    25   8.4  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 565 TGCLQ-LIEGKLNGLLSILDDQCNFPWATNETLLQKFNSVHENNPFYEKPQR 615
           TG  Q +I+   NG +++ D+      +  E +++KFN V EN  F EK  R
Sbjct: 37  TGTSQKIIDEVYNGNVNVEDENVQ---SYVECMMKKFNVVDENGNFNEKNTR 85


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 264 VLEAFGNAKTAHNNNSSRFGKFIQVNYKENGMVHGAVVQKYLLEKSRI 311
           ++ +  N KT HNNN+ ++    + NY  N        + Y++   +I
Sbjct: 81  IISSLSN-KTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQI 127


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 66   ERRLGPNESPVAVMLLWPKNKSTGQYNRFYLREKIQDEPWMENFSVDPQLIKDY 119
            E    P++ P   +L   ++    QY +   R K  + PW+E   V P+LI +Y
Sbjct: 968  ESSCNPDQKPTEYLL---EDSMKQQYGK---RRK--EPPWLEGVHVTPELIYEY 1013


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 72  NESPVAVMLLWPKNKSTGQYNRFYLREKIQDEPW 105
           +  P   +LL  K   TG Y + YL+ ++++E +
Sbjct: 95  DNKPEIWVLLEAKYDPTGAYKQHYLQNRVKEESY 128


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
            determiner protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 1031 GFQAIARGYLLRKSLPEIRKKLPPPIDRYEHDGKAPHALTKAELYKLQETCSETYKTCID 1090
            GFQ  +  Y   +S    R +     +  E D +      + E    + T  + Y    +
Sbjct: 223  GFQHTSSRYSRERSCSRDRNR-----EYREKDRRYEKLHNEKEKLLEERTSRKRYSRSRE 277

Query: 1091 KQLLEKKRENISIEEKTSPPLNHKDRKTITAEKNTKINNKIDSSIIENRMLSEDKRRY 1148
            ++    K EN   + + +     +DRK     K  KI + + +  I N   +  K +Y
Sbjct: 278  REKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQY 335


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 72  NESPVAVMLLWPKNKSTGQYNRFYLREKIQDEPW 105
           +  P   +LL  K   TG Y + YL+ ++++E +
Sbjct: 95  DNKPEIWVLLEAKYDPTGAYKQHYLQNRVKEESY 128


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,260
Number of Sequences: 429
Number of extensions: 23501
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 9
length of query: 2027
length of database: 140,377
effective HSP length: 68
effective length of query: 1959
effective length of database: 111,205
effective search space: 217850595
effective search space used: 217850595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)