Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001422-TA|BGIBMGA001422-PA|IPR007087|Zinc finger,
C2H2-type
(273 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 80 4e-16
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 69 7e-13
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 69 7e-13
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 66 7e-12
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 60 3e-10
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 57 2e-09
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 54 2e-08
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 52 9e-08
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 50 4e-07
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 48 1e-06
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 43 4e-05
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 40 3e-04
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 34 0.019
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.54
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 29 0.54
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 29 0.72
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.72
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 27 2.9
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 5.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 5.1
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 26 5.1
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 26 6.7
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.8
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 8.8
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.8
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 79.8 bits (188), Expect = 4e-16
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 159 FRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSHSGDKP 218
F CP EEC K Y++ S + HLR HS E+P+ C + CS F R L H+R H+ KP
Sbjct: 23 FHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKP 82
Query: 219 YRC--VECEKRFARSDHLAKHGRVH 241
+ C C+ +F HL +H VH
Sbjct: 83 FSCHYDGCDAQFYTQQHLERHIEVH 107
Score = 60.9 bits (141), Expect = 2e-10
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 159 FRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSHSGDKP 218
F C CSK + + SH++ H R H+ KP+ C + C +F L RH H KP
Sbjct: 53 FVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKP 112
Query: 219 YRCV--ECEKRFARSDHLAKH 237
Y C C++ F++ L H
Sbjct: 113 YACTWEGCDECFSKHQQLRSH 133
Score = 58.0 bits (134), Expect = 1e-09
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 156 VGAFRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARH-RRSHS 214
V F C + C + H+ H+ H KPY CTW C F++ +L H H+
Sbjct: 80 VKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHT 139
Query: 215 GDKPYRCV--ECEKRFARSDHLAKH-GRVH 241
PY C +CE RFA L H R H
Sbjct: 140 HLLPYPCTYQDCELRFATKQKLQNHVNRAH 169
Score = 50.0 bits (114), Expect = 4e-07
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 184 SGEKPYRCTWGDCSWRFARSDELARHRRSHSGDKPYRC--VECEKRFARSDHLAKHGRVH 241
S +K + C + +C +++R L +H R+HS ++P+ C C K F R HL H R H
Sbjct: 18 SAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCH 77
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 166 CSKLYAKASHVRAHLRRHSG----EKPYRCTWGDCSWRFARSDELARH-RRSHSGDKPYR 220
C + + A+H+R H+ H K Y C C F RS L +H H G+ +
Sbjct: 209 CGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFH 268
Query: 221 CVECEKRFARSDHLAKH 237
C C +F L +H
Sbjct: 269 CDSCGTKFGYKHMLQRH 285
Score = 34.7 bits (76), Expect = 0.014
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 159 FRCPVEECSKLYAKASHVRAHLR-RHSGEKPYRCTWGDCSWRFARSDELARH 209
+ CP+E C K + ++S ++ H+ H G + C C +F L RH
Sbjct: 236 YHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHC--DSCGTKFGYKHMLQRH 285
Score = 30.3 bits (65), Expect = 0.31
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 187 KPYRCTWGDCSWRFARSDELARHRRSH 213
+ Y C++ +C++RF R ++ RH SH
Sbjct: 347 REYSCSFPECNYRFKRLYDMHRHLNSH 373
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 68.9 bits (161), Expect = 7e-13
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 152 YC-PEV-GAFRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARH 209
YC PE G + C C+K A+ +V +H++ H ++PYRC C F R +L RH
Sbjct: 434 YCGPEADGKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDL--CKAGFVRHHDLKRH 491
Query: 210 RRSHSGDKPYRCVECEKRFARSDHLAKH 237
R H +PY C EC KRF R D L +H
Sbjct: 492 LRIHENGRPYVC-ECLKRFNRLDALNRH 518
Score = 49.6 bits (113), Expect = 5e-07
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 189 YRCTWGDCSWRFARSDELARHRRSHSGDKPYRCVECEKRFARSDHLAKHGRVH 241
Y C + C+ R AR + H ++H D+PYRC C+ F R L +H R+H
Sbjct: 443 YVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIH 495
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 68.9 bits (161), Expect = 7e-13
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 157 GAFRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSHSGD 216
G + C C+K + +A ++++H+ H+ +P++C+ C FAR + RH + H+G
Sbjct: 568 GNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSI--CKKSFARQHDKRRHEQLHTGI 625
Query: 217 KPYRCVECEKRFARSDHLAKH 237
K + CV C +RFAR D L +H
Sbjct: 626 KAFACVTCNQRFARMDALNRH 646
Score = 50.0 bits (114), Expect = 4e-07
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 189 YRCTWGDCSWRFARSDELARHRRSHSGDKPYRCVECEKRFARSDHLAKHGRVH 241
Y CT+ C+ RF R+ L H +H+ +P++C C+K FAR +H ++H
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLH 622
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 159 FRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSHSGDKP 218
F+C + C K +A+ R H + H+G K + C C+ RFAR D L RH +S G
Sbjct: 600 FQCSI--CKKSFARQHDKRRHEQLHTGIKAFACV--TCNQRFARMDALNRHYKSEVGQNC 655
Query: 219 YR 220
R
Sbjct: 656 LR 657
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 65.7 bits (153), Expect = 7e-12
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 159 FRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSHS 214
++CP+ C+K + + H H+R H+GEKP+ CT+ C+ RF+RSDEL RH R H+
Sbjct: 26 YKCPL--CTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 187 KPYRCTWGDCSWRFARSDELARHRRSHSGDKPYRCV--ECEKRFARSDHLAKHGRVH 241
+PY+C C+ F R + RH R+H+G+KP+ C C KRF+RSD L +H R+H
Sbjct: 24 RPYKCPL--CTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIH 78
Score = 33.1 bits (72), Expect = 0.044
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 207 ARHRRSHSGDKPYRCVECEKRFARSDHLAKHGRVH 241
+R ++ +PY+C C K F R +H +H R H
Sbjct: 14 SRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTH 48
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 60.5 bits (140), Expect = 3e-10
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 158 AFRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSH 213
++ CP C +++ + H H+R H+GEKP+ C++ C RF R DEL RH R+H
Sbjct: 3 SYECPF--CKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 187 KPYRCTWGDCSWRFARSDELARHRRSHSGDKPYRC--VECEKRFARSDHLAKHGRVH 241
K Y C + C F R + RH RSH+G+KP+ C C+KRF R D L +H R H
Sbjct: 2 KSYECPF--CKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 174 SHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRS-HSGDKPYRCVECEKRFARSD 232
S+ + + R G K + C +CS +F RS+ L RH RS H+ +KP+ C+ C KRF+R D
Sbjct: 408 SNRKTSVPRSPGGKSFVCP--ECSKKFKRSEHLRRHIRSLHTSEKPFVCI-CGKRFSRRD 464
Query: 233 HLAKHGRVH 241
+L +H R+H
Sbjct: 465 NLRQHERLH 473
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 158 AFRCPVEECSKLYAKASHVRAHLRR-HSGEKPYRCTWGDCSWRFARSDELARHRRSHSGD 216
+F CP ECSK + ++ H+R H+R H+ EKP+ C C RF+R D L +H R H
Sbjct: 422 SFVCP--ECSKKFKRSEHLRRHIRSLHTSEKPFVCI---CGKRFSRRDNLRQHERLHVNA 476
Query: 217 KP 218
P
Sbjct: 477 SP 478
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 54.0 bits (124), Expect = 2e-08
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 185 GEKPYRCTWGDCSWRFARSDELARHRRSHSGDKPYRCVECEKRFARSDHLAKH 237
G+ + CT+ DC F R + L RH R+H K + C C + FARSD L +H
Sbjct: 22 GDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRH 74
Score = 45.6 bits (103), Expect = 8e-06
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 159 FRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARH 209
F C +C K + + H+R H R H K + C++ C+ FARSD L RH
Sbjct: 26 FYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSF--CNRAFARSDVLNRH 74
Score = 32.7 bits (71), Expect = 0.058
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 206 LARHRRSHS-GDKPYRCV--ECEKRFARSDHLAKHGRVH 241
L + R+H GD + C +C K F R +HL +H R H
Sbjct: 12 LKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTH 50
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 52.0 bits (119), Expect = 9e-08
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 174 SHVRAHLRRHSGEKP-YRCTWGDCSWR-FARSDELA--RHRRSHSGDKPYRCV--ECEKR 227
S++ + L +P Y C W DC + ++ A H RSH+G+KP+ C EC++
Sbjct: 57 SNINSILDHIGNRRPKYTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRS 116
Query: 228 FARSDHLAKHGR-VH 241
F RSD LAKH R VH
Sbjct: 117 FTRSDALAKHMRTVH 131
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 178 AHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRS-HSGD 216
AHLR H+GEKP+ C+ +C F RSD LA+H R+ H D
Sbjct: 95 AHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEAD 134
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 172 KASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSHSGDKPYRCVECEKRFARS 231
KA RA+ G+ Y+C + C+ F R + RH RSH+ K + C C F RS
Sbjct: 3 KAKKSRAY---QEGDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRS 59
Query: 232 DHLAKH 237
D L +H
Sbjct: 60 DVLNRH 65
Score = 45.6 bits (103), Expect = 8e-06
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 159 FRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARH 209
++C + C+K + + H R H R H+ K + C CS F RSD L RH
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICP--HCSSSFTRSDVLNRH 65
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 208 RHRRSHSGDKPYRC--VECEKRFARSDHLAKHGRVH 241
+ R GD Y+C C K F R +H +H R H
Sbjct: 6 KSRAYQEGDIRYKCDFQGCTKSFTRKEHARRHFRSH 41
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 48.4 bits (110), Expect = 1e-06
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 164 EECSKLYAKASHVRAHLRRHSGEKPYRCTWGD-----CSWRFARSDELARHRRS-HSGDK 217
E C++ +A+ H++ H+R H+ EKP+ C+ D C +F+R D L RH++ H +
Sbjct: 73 ETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRNPQ 132
Query: 218 PYR 220
P R
Sbjct: 133 PRR 135
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 187 KPYRCTWGDCSWRFARSDELARHRRSHSGDKPYRCVE-------CEKRFARSDHLAKH 237
K Y C C+ FAR + L RH RSH+ +KP+ C E C ++F+R D L +H
Sbjct: 68 KQYVCE--TCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRH 123
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 217 KPYRCVECEKRFARSDHLAKHGRVH 241
K Y C C + FAR +HL +H R H
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSH 92
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 174 SHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSHSGDKPYRC--VECEKRFARS 231
SH + + YRCT +C F+R L H SH+G++P+ C C K F
Sbjct: 453 SHTGSSSTSSAANVRYRCT--ECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVR 510
Query: 232 DHLAKHGRVH 241
++ +H R+H
Sbjct: 511 SNMRRHQRIH 520
Score = 42.3 bits (95), Expect = 7e-05
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 159 FRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSH 213
+RC EC + +++ S ++ H H+GE+P+ C + C F + RH+R H
Sbjct: 468 YRCT--ECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 196 CSWRFARSDELARHRRSHSGDKPYRCVECEKRFARSDHLAKH 237
C+ RF R + L RH+ HS +P C CE + R D L +H
Sbjct: 36 CAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRH 77
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 219 YRCVECEKRFARSDHLAKHGRVH 241
+ C +C KRF R ++L +H H
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACH 53
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 34.3 bits (75), Expect = 0.019
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 159 FRCPVEECSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARSDELARHRRSHSGDKP 218
++CPV C K Y + ++ H + H G CS + H+ +KP
Sbjct: 350 YKCPVPNCDKAYKNQNGLKYH-KLH----------GHCSPITTPTPAPIPHQGFVVENKP 398
Query: 219 YRCVECEKRFARSDHLAKHGRVH 241
YRC C KR+ + L K+ R H
Sbjct: 399 YRCEVCSKRYKNLNGL-KYHRTH 420
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.5 bits (63), Expect = 0.54
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 8 PHLEEAL-LNDQLLFEYSPAESLINFELPSFDSDTSDWQLSDLDFNCDGFVIGADDPNKE 66
P E+ L L + L + + + +L D + +D + D D + +DP +E
Sbjct: 4078 PENEDHLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDFEDPLEE 4137
Query: 67 ENNLVDDLPVFDFEDL 82
N L +D+ DF DL
Sbjct: 4138 NNTLDEDIQQDDFSDL 4153
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 29.5 bits (63), Expect = 0.54
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 147 FGEPKYCPEVGAFRCPVEE---CSKLYAKASHVRAHLRRHSGEKPYRCTWGDCSWRFARS 203
+ E ++C ++ A +CP S LY K SH A H + Y C W
Sbjct: 262 WSEYQFCNQIWAGKCPKTIRMFYSNLYKKLSHRDAKSIYHHVRRAYNPFEDRCVWSKEED 321
Query: 204 DELARHRRSH 213
+EL ++ H
Sbjct: 322 EELRKNVVEH 331
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.72
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 62 DPNKEENNLVDDLPVFDFEDLDKSIIDEYLLEALSSDLSNDAQLSNTESIPNISSVYALE 121
D + E NL+ D+ + +D D S+I+ L SD + A+ S + SS +
Sbjct: 395 DKSLELINLIPDIVIQSRKDYDDSLIE----AELESDEESTAETSKHVTSKKTSS-RGGQ 449
Query: 122 THDYTSIESEWPRPREKATPEVKVRFGEPKYCPEVGAFRCPVEECS 167
T + ++ P E TP K E P V PV E +
Sbjct: 450 TQQAVEVHTDANSPEENNTPVTKKEV-ETSKPPAVSGSTPPVNEAA 494
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.1 bits (62), Expect = 0.72
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 72 DDLPVFDF--EDLDKSIIDEYLLEALSSDLSNDAQLSNTESIPNISSVYALETHDYTSIE 129
+++PV D E++ K+I +LE+ SSD + LS T+ P++S + S++
Sbjct: 115 NNIPVSDTNNEEISKNIYGAPILESTSSDFQSKDSLSTTQ--PSVSGGNGSTSQSPPSLD 172
Query: 130 SEWPRP 135
E +P
Sbjct: 173 VEQNKP 178
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 22 EYSPAESLINFELPSFDSDTSDWQLSDLDFNCDGFVIGADDPNKEENNLVDDLPVFDFED 81
E+ AE+L + E +D + D C+G + + EE+ + P+F +
Sbjct: 71 EFEEAETLSDLEHDEEPQTFADEFIDDEAKECEGEEEDSVFDSDEEHEVK---PMFSDDS 127
Query: 82 LDKSIIDEYLLEALSSDLSNDAQLSNTES 110
D+ ++ +EA+S L +A+L E+
Sbjct: 128 GDEEDLELANMEAMSRKLDEEAELEEKEA 156
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 64 NKEENNLVDDLPVFDFEDLDKSIIDEYLLEALSSDLSNDAQLSNTESI 111
N EEN + FED ++ I ++ +E +++ DA + +S+
Sbjct: 7 NTEENEKTHVESIVKFEDSNRGTITDFHIETANNEEEKDANVILNKSV 54
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 151 KYCPEVGAFRCPVEE------CSKLYAKASHVRAHLRR-HSGEKP-YRCTWGDCSWRFAR 202
K+ ++G RC ++ C+ ++++ + H H+ +P +RC F+R
Sbjct: 564 KFGKQIGPVRCTLQNRVTGEICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSR 623
Query: 203 SDELARHRRSHSG 215
D L RH R G
Sbjct: 624 HDALVRHLRVKHG 636
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 68 NNLVDDLPVFDFEDLDKSIIDE 89
NN D LP+ E LDKS ID+
Sbjct: 354 NNKEDHLPLLSDEKLDKSAIDK 375
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 87 IDEYLLEALSSDLSNDAQLSNTESIPNISSVYALETH 123
ID++ EA + S AQL +IPN+S ++ L +H
Sbjct: 124 IDDFA-EASTILFSQLAQLPIVANIPNLSIIFVLHSH 159
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 8.8
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 10 LEEALLNDQL-LFEYSPAESLINFELPSFDSDTSDWQLSDLDFNCDGFVIGADDPNKEEN 68
LE+ L+ ++L + SP S E SF +L + N + + DP+ E
Sbjct: 801 LEKLLMIERLETSDQSPTSSSNFEESESFAVSKKVLELVRISKNKEALICFTKDPSIEAF 860
Query: 69 NLVDDLPVFDFEDLDKSIIDEYLLEALSSDLSNDAQLS 106
+ D+P + +D SI + LS + + QLS
Sbjct: 861 RSLQDVPDYSLDDC-SSIHLLAFIHVLSKLIIKEEQLS 897
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 91 LLEALSSDLSNDAQLSNTESIPNISSVY--ALETHDYTSIES 130
L+ + + S+ + +S+T SIP+ISS ++ T +TS+ S
Sbjct: 130 LVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSS 171
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 159 FRCPVEECSKLYAKASHVRAHLRR 182
+RC V C+KL+ VR H+ +
Sbjct: 474 YRCHVGTCAKLFLGPEFVRKHINK 497
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,275
Number of Sequences: 5004
Number of extensions: 62484
Number of successful extensions: 235
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 58
length of query: 273
length of database: 2,362,478
effective HSP length: 72
effective length of query: 201
effective length of database: 2,002,190
effective search space: 402440190
effective search space used: 402440190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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