Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001421-TA|BGIBMGA001421-PA|undefined
         (84 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   1.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   2.5  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    24   2.5  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    23   4.4  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    23   4.4  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    23   7.7  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      23   7.7  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 2   HAHDFLNDSGHDIPRFVVDQNGTE 25
           H+ D    S H +P  V  +NGT+
Sbjct: 720 HSEDVTGQSNHALPNSVTKKNGTK 743


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 3   AHDFLNDSGHDIPRFVVDQNGTECENPFEE-TRQATTKPVHVDCLISTQEQRPMENGTAN 61
           A +  N+   DI     D +  E +N  E+ T + ++KPV    +  ++  + +E G  N
Sbjct: 339 AVEIANNVKEDIVSTAND-DANELDNTSEKATLETSSKPVTEQAIEQSEVVQEVEEGDTN 397

Query: 62  VFLTSALTPS 71
           +   + L P+
Sbjct: 398 MTTNTILKPT 407


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 3  AHDFLNDSGHDIPRFVVDQNGTECE 27
          +HD L   G D+PR    ++G E E
Sbjct: 30 SHDILRKFGVDVPRGAPARSGEEAE 54


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 18  VVDQNGTECENPFEETRQATTKPVHVDCLISTQEQRPMEN 57
           V+D++G+ CE  F++   A  K    + L   + +R  E+
Sbjct: 175 VLDRDGSLCEEAFKKALNAVEKQFQEETLQKQRFEREDES 214


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 23  GTECENPFEETRQATTKPVHV-DCLI 47
           G++ E+ +EET+  T+  +HV +C +
Sbjct: 788 GSQLESAYEETKVPTSYGIHVRECSV 813


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)

Query: 29  PFEETRQATTKPVHV 43
           P E T   T KPVHV
Sbjct: 841 PLEGTENPTDKPVHV 855


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 17  FVVDQNGTECENPFEETRQATTKPV 41
           ++VD   ++ +NP   T   TT P+
Sbjct: 127 WIVDSYASDQDNPSVHTHNRTTPPI 151


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,494
Number of Sequences: 5004
Number of extensions: 12954
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 7
length of query: 84
length of database: 2,362,478
effective HSP length: 60
effective length of query: 24
effective length of database: 2,062,238
effective search space: 49493712
effective search space used: 49493712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)