GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001421-TA|BGIBMGA001421-PA|undefined
         (84 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.34 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   3.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    19   7.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    19   7.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 0.34
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 24   TECENPFEETRQATTKPVHVDCLISTQEQRPMENGTAN 61
            TEC      T   +T P+  D  ++T   RP+   T++
Sbjct: 2282 TECHPDASSTMAPSTTPMVPDKPVTTTTSRPIGTDTSD 2319


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 15  PRFVVDQNGTECENPFEETRQATTKPVHVDCLISTQEQRPMENGTAN 61
           P F VD    E E   EET       V V      QE+   E   +N
Sbjct: 421 PAFKVDPTQVESEEEDEETSTTVFSNVEV-----VQEEAKKEESDSN 462



 Score = 19.8 bits (39), Expect = 4.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 7   LNDSGHDIPRFVVDQNGT 24
           L++ G+  P  ++D +GT
Sbjct: 317 LDEEGNPCPDIIIDVHGT 334


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 57  NGTANVFLTSALTPSTLAVLVLVKG 81
           NG   VFLT+    +  AV+ +  G
Sbjct: 447 NGVLFVFLTNMTFQNVFAVINVFSG 471


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 57  NGTANVFLTSALTPSTLAVLVLVKG 81
           NG   VFLT+    +  AV+ +  G
Sbjct: 447 NGVLFVFLTNMTFQNVFAVINVFSG 471


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,119
Number of Sequences: 317
Number of extensions: 666
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 84
length of database: 114,650
effective HSP length: 46
effective length of query: 38
effective length of database: 100,068
effective search space:  3802584
effective search space used:  3802584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)