Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001421-TA|BGIBMGA001421-PA|undefined
(84 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0442 - 24369904-24370578 27 2.5
03_02_0227 + 6576333-6577769 27 2.5
01_06_0191 - 27334412-27335155 27 2.5
05_04_0454 + 21383068-21384525 26 3.3
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780... 26 4.3
07_01_0278 + 2039873-2039896,2040342-2040407,2040842-2040903,204... 25 5.7
03_06_0598 + 34977063-34977220,34977957-34978101,34978362-349784... 25 5.7
02_01_0079 + 554635-556098 25 5.7
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739... 25 7.6
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 25 7.6
>03_05_0442 - 24369904-24370578
Length = 224
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 24 TECENPFEETRQATTKPV-HVDCLIS---TQEQRPMENGTANVFLTSAL 68
++C F+ T + + +D L+S ++EQR + ANV+LTSA+
Sbjct: 124 SDCVRDFDATYMFADETLARIDFLVSGRGSEEQRASDKLRANVWLTSAM 172
>03_02_0227 + 6576333-6577769
Length = 478
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 6 FLNDSGHDIPRFVVDQNGTECENPFEETRQATTK 39
F+ + G + ++V NG E ENP + +Q K
Sbjct: 399 FVGEEGRKLLQYVYWSNGRETENPSVDNKQCPGK 432
>01_06_0191 - 27334412-27335155
Length = 247
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 11 GHDIPRFVVDQNGTECENPFEETRQATTKPVHVDCLISTQEQRPMENGTANVFLTSALT 69
GH +P+F + NP T P ++ +T + G V +T+AL+
Sbjct: 109 GHVLPQFYSMDSFQTASNPVRTQASGTDGPYTLNITSTTNNNVNVSTGVVEVTVTNALS 167
>05_04_0454 + 21383068-21384525
Length = 485
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 5 DFLNDSGHDIPRFVVDQNGTECENPFEETRQATT 38
D + D HD+PR D +G P R A T
Sbjct: 95 DEVEDDDHDLPRPPDDPDGARSPGPSHSERMAKT 128
>01_06_1310 -
36176008-36176472,36176547-36176774,36177313-36178080,
36178250-36178732,36179883-36180010,36180539-36180607,
36180688-36180892,36181005-36181067
Length = 802
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 6 FLNDSGHDIPRFVVDQNGTECENPFEETRQATTKPVHVD 44
FL+ SG D V + N F+E RQ + V +D
Sbjct: 381 FLSISGSDFMEMFVGVGPSRVRNLFQEARQCSPSIVFID 419
>07_01_0278 +
2039873-2039896,2040342-2040407,2040842-2040903,
2042839-2043067,2043787-2044014,2044177-2044469,
2044594-2044909
Length = 405
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 7 LNDSGHDIPRFVVDQNGTECENPFEETRQATTKPVHVDCLISTQEQRPMEN 57
L+D G DIP V + + + R+ TT+P I Q EN
Sbjct: 351 LDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSEN 401
>03_06_0598 +
34977063-34977220,34977957-34978101,34978362-34978481,
34978640-34978774,34979138-34979213,34979398-34979450,
34979594-34979695,34979848-34979964,34980170-34980228,
34980810-34980984,34981628-34981762,34981855-34981953,
34982143-34982251,34982981-34983093,34983206-34983265,
34983821-34983835
Length = 556
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 26 CENPFEETRQATTKPVHVDCLI 47
C +PF E+++A P HV+ L+
Sbjct: 465 CRHPFNESKRAYVVPQHVEELL 486
>02_01_0079 + 554635-556098
Length = 487
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 6 FLNDSGHDIPRFVVDQNGTECENPFEETRQATTKPVHV 43
FL D G + ++V NG E P +Q K V V
Sbjct: 415 FLGDDGEALLQYVYWSNGPETGEPSPGNKQCAAKEVVV 452
>05_05_0098 +
22373384-22373522,22373566-22373772,22373879-22373953,
22374611-22374744,22375189-22375674,22375854-22376621,
22377367-22377594,22378294-22378773
Length = 838
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 6 FLNDSGHDIPRFVVDQNGTECENPFEETRQATTKPVHVD 44
FL+ SG D V + N F+E RQ + +D
Sbjct: 412 FLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFID 450
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 25.0 bits (52), Expect = 7.6
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 12 HDIPRFVVDQNGTECENPFEETRQATTKPVHVDCLISTQEQRPMENGTANVFLTSALTPS 71
HD P+ + ++GT C P+ + K D ST E + N A +F +L P
Sbjct: 499 HDNPKVSMKKDGTFCGKPWRNVLE-HLKIQDTDLWSSTNEDNCLWN--AKLFPVMSL-PE 554
Query: 72 TLAVLVLVKG 81
TL V + + G
Sbjct: 555 TLKVGMWLMG 564
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.130 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,646
Number of Sequences: 37544
Number of extensions: 74573
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 10
length of query: 84
length of database: 14,793,348
effective HSP length: 63
effective length of query: 21
effective length of database: 12,428,076
effective search space: 260989596
effective search space used: 260989596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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