GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001421-TA|BGIBMGA001421-PA|undefined
         (84 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p...    30   0.22 
At1g13420.1 68414.m01566 sulfotransferase family protein similar...    26   2.7  
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ...    26   3.6  
At4g33280.1 68417.m04735 transcriptional factor B3 family protei...    25   4.7  
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-...    25   6.2  
At3g02880.1 68416.m00282 leucine-rich repeat transmembrane prote...    25   8.3  
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-...    25   8.3  
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta...    25   8.3  

>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
           subunit, putative contains 5 WD-40 repeats (PF00400);
           similar to katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 1180

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 22  NGTECENPFEETRQATTKPVHVDCLISTQEQRP-MENGTANVFLTSALTPSTLAVL-VLV 79
           N T  E+P   TRQA T P  V  +I  Q Q   M++    V  T  L  S+  V+ V++
Sbjct: 825 NLTSDESPVTSTRQAKTSPAPVTPVILNQRQTTNMKSDEPPVISTRPLRTSSARVMPVIL 884

Query: 80  KGVST 84
              ST
Sbjct: 885 NQAST 889


>At1g13420.1 68414.m01566 sulfotransferase family protein similar
          to steroid sulfotransferase 1 GI:3420004 from (Brassica
          napus); contains Pfam profile PF00685: Sulfotransferase
          domain
          Length = 331

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 13 DIPRFVVDQNGTECENPFEETRQ-ATTKPVHVDC 45
          DIPR + ++   E EN  EET+   ++ P  +DC
Sbjct: 5  DIPRNLKEEEEEEEENQSEETKSLISSLPSDIDC 38


>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
           SP|Q9S5A3 Chaperone protein dnaJ {Listeria
           monocytogenes}; contains Pfam profiles PF00226 DnaJ
           domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
           central domain (4 repeats)
          Length = 442

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 37  TTKPVHVDCLISTQEQRPMENGTANVFLTSALTPSTLAVLVLVKGV 82
           T K  ++D ++ T  + P  +GT ++ + +   PST  V+   KGV
Sbjct: 349 TCKISYIDAILGTTLKVPTVDGTVDLKVPAGTQPSTTLVMA-KKGV 393


>At4g33280.1 68417.m04735 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 461

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 16  RFVVDQNGTECENPFEETRQATTKPVHVDCLISTQEQRPMENGTANVFLTS 66
           +FV D N  E +    E   + TKP+H++  I   E+    N    V+  S
Sbjct: 410 KFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGEETERTNNVDPVYTIS 460


>At1g07510.1 68414.m00804 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 813

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 6   FLNDSGHDIPRFVVDQNGTECENPFEETRQATTKPVHVD 44
           FL+ SG D     V    +   N F+E RQ     + +D
Sbjct: 388 FLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFID 426


>At3g02880.1 68416.m00282 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069
           Eukaryotic protein kinase domain, PF00560 Leucine Rich
           Repeat (5 copies)
          Length = 627

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 4   HDFLNDSGHDIPRFVVDQNGTECENP 29
           H  LN+ G D+PR+V  Q+ TE + P
Sbjct: 542 HQQLNEEGVDLPRWV--QSVTEQQTP 565


>At2g29080.1 68415.m03535 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 809

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 6   FLNDSGHDIPRFVVDQNGTECENPFEETRQATTKPVHVD 44
           FL+ SG D     V    +   + F+E RQA    + +D
Sbjct: 383 FLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFID 421


>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 416

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 19  VDQNGTECENPFEETRQATTKPVHVDCLISTQEQRPMENGTANVFLTSALTP 70
           V  +  +C N        T +     C ++T +   + NGT    LT +L P
Sbjct: 272 VSCSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYNGIANGTILTMLTRSLQP 323


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,461
Number of Sequences: 28952
Number of extensions: 65049
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 8
length of query: 84
length of database: 12,070,560
effective HSP length: 63
effective length of query: 21
effective length of database: 10,246,584
effective search space: 215178264
effective search space used: 215178264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)