Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001420-TA|BGIBMGA001420-PA|undefined
         (77 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL365181-2|CAM15718.1|  582|Homo sapiens novel protein protein.        31   0.74 
BC050445-1|AAH50445.1|  582|Homo sapiens soc-2 suppressor of cle...    28   5.2  
AL158163-2|CAH72812.1|  582|Homo sapiens soc-2 suppressor of cle...    28   5.2  
AF068920-1|AAC39856.1|  582|Homo sapiens Ras-binding protein SUR...    28   5.2  
AF054828-1|AAC25698.1|  582|Homo sapiens leucine-rich repeat pro...    28   5.2  
AB020669-1|BAA74885.2|  584|Homo sapiens KIAA0862 protein protein.     28   5.2  

>AL365181-2|CAM15718.1|  582|Homo sapiens novel protein protein.
          Length = 582

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 17 ALSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYIET 63
          AL + Q  +  NNF++  +L     + RD P   A A N+   Y+ET
Sbjct: 46 ALQAGQNHEALNNFQRAFLLASKAPQTRDTPVLQACAFNLGAAYVET 92


>BC050445-1|AAH50445.1|  582|Homo sapiens soc-2 suppressor of clear
           homolog (C. elegans) protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 5   ELGNLLEEFSTLALSSEQPEK---TTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYI 61
           E+G L+    TLALS         + +N KK  +LD  H++ R+IP+      ++  +Y+
Sbjct: 141 EVGCLVN-LMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYL 199


>AL158163-2|CAH72812.1|  582|Homo sapiens soc-2 suppressor of clear
           homolog (C. elegans) protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 5   ELGNLLEEFSTLALSSEQPEK---TTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYI 61
           E+G L+    TLALS         + +N KK  +LD  H++ R+IP+      ++  +Y+
Sbjct: 141 EVGCLVN-LMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYL 199


>AF068920-1|AAC39856.1|  582|Homo sapiens Ras-binding protein SUR-8
           protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 5   ELGNLLEEFSTLALSSEQPEK---TTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYI 61
           E+G L+    TLALS         + +N KK  +LD  H++ R+IP+      ++  +Y+
Sbjct: 141 EVGCLVN-LMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYL 199


>AF054828-1|AAC25698.1|  582|Homo sapiens leucine-rich repeat
           protein SHOC-2 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 5   ELGNLLEEFSTLALSSEQPEK---TTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYI 61
           E+G L+    TLALS         + +N KK  +LD  H++ R+IP+      ++  +Y+
Sbjct: 141 EVGCLVN-LMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYL 199


>AB020669-1|BAA74885.2|  584|Homo sapiens KIAA0862 protein protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 5   ELGNLLEEFSTLALSSEQPEK---TTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYI 61
           E+G L+    TLALS         + +N KK  +LD  H++ R+IP+      ++  +Y+
Sbjct: 143 EVGCLVN-LMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYL 201


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.130    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,716,840
Number of Sequences: 224733
Number of extensions: 285524
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 6
length of query: 77
length of database: 73,234,838
effective HSP length: 56
effective length of query: 21
effective length of database: 60,649,790
effective search space: 1273645590
effective search space used: 1273645590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)