GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001420-TA|BGIBMGA001420-PA|undefined
         (77 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   0.84 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   1.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    19   5.9  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 0.84
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 26  TTNNFKKPGILDFLHSRKRDIPN 48
           T  N KK   LD  H+R  +IPN
Sbjct: 291 TFRNTKKLQWLDTSHNRISEIPN 313



 Score = 21.0 bits (42), Expect = 1.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 35  ILDFLHSRKRDIPN 48
           I+DF H+R R +P+
Sbjct: 324 IVDFSHNRLRSLPD 337


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 5   ELGNLLEEFSTLALSSEQPEKTTNN 29
           E+G + E    + LS  +PEK T +
Sbjct: 161 EVGGVEEAKGPVDLSKSEPEKKTES 185


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 1   MVHRELGNLLEEFSTLALSSEQPEKTTNN 29
           M H EL  ++     L+LSS+      +N
Sbjct: 322 MSHEELSAMVNRCHPLSLSSDHQAMLHHN 350


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.130    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581
Number of Sequences: 317
Number of extensions: 539
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 77
length of database: 114,650
effective HSP length: 46
effective length of query: 31
effective length of database: 100,068
effective search space:  3102108
effective search space used:  3102108
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)
S2: 36 (18.6 bits)