Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001420-TA|BGIBMGA001420-PA|undefined
(77 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 29 0.074
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 0.30
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 25 1.2
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 1.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 1.2
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 24 2.8
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 23 3.7
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 23 3.7
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 23 3.7
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 23 4.9
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 6.4
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 23 6.4
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 22 8.5
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 22 8.5
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 22 8.5
>SPAC11D3.03c |||meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 29.1 bits (62), Expect = 0.074
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 10 LEEFSTLALSSEQPEKTTNNFKKP 33
+ E S LA SS++PEKT N KP
Sbjct: 1 MTEISELASSSQKPEKTKYNLPKP 24
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 0.30
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 30 FKKPGIL-DFL---HSRKRDIPNATAAAVNIVRMYIETEAARVNYTEIAG 75
+K GIL D+L HSR R +P AVNI+ ++ +N ++ G
Sbjct: 233 WKMRGILTDWLIEVHSRFRLLPETLFLAVNIIDRFLSLRVCSLNKLQLVG 282
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 25.0 bits (52), Expect = 1.2
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 18 LSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYIETEA 65
LS+E K T +K G L+ RDI A + + +V YIE EA
Sbjct: 106 LSNENLIKLT---QKSGECPPLYINSRDILGAASHPIEVVGPYIEDEA 150
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 1.2
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 5 ELGNLLEEFSTLALSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYIETE 64
+ N+L+E + ++ ++ +N + ++D S D +A+ VNI + T
Sbjct: 11 QTSNILKELHSTSIFTDSTTSQLHNGGENSVMDTEESSAIDKLSASLQQVNISSPSVPTS 70
Query: 65 AARVNYTEIAG 75
+RV + G
Sbjct: 71 QSRVTQGQSLG 81
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.0 bits (52), Expect = 1.2
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 2 VHRELGNLLEEFSTLALSSEQPEK--TTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRM 59
V E+ N+ S ++ +Q K + N KK ++ F S + N N+ ++
Sbjct: 257 VKNEMSNIKSAISEGYIAHDQQSKKVSVQNIKKEFLIPFEFSLEGGFLNYNKTFSNLYKV 316
Query: 60 YIETEAAR 67
ETE R
Sbjct: 317 LSETEKTR 324
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 23.8 bits (49), Expect = 2.8
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 46 IPNATAAAVNIV--RMYIETEAARVNYTEIAGTC 77
+P A NI R Y+ +Y E+A TC
Sbjct: 60 LPQTALATANIYFHRFYLRFSLKNYHYYEVAATC 93
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 23.4 bits (48), Expect = 3.7
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 6 LGNLLEEFSTL-ALSSEQPEKTTNNFKKPGILDFLHSRKRDIPN 48
L N + FS+ L S K+ N K +LDFL R N
Sbjct: 290 LSNFVNSFSSFFELISHFLIKSAQNLKGDSLLDFLFDYARSCQN 333
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 23.4 bits (48), Expect = 3.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 10 LEEFSTLALSSEQPEKTTNNFKKPG 34
+++F A SSE P T NF G
Sbjct: 361 MQKFPANAASSESPPNATGNFLPSG 385
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 23.4 bits (48), Expect = 3.7
Identities = 8/13 (61%), Positives = 13/13 (100%)
Query: 1 MVHRELGNLLEEF 13
+V+R+LGNLLE++
Sbjct: 14 IVYRQLGNLLEQY 26
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 23.0 bits (47), Expect = 4.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 6 LGNLLEEFSTLALSSEQPEKTTNNFKK 32
+ N+L++ + + E+ EK NF K
Sbjct: 893 MSNVLDQLPAMTIGQEEREKFLANFSK 919
>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 22.6 bits (46), Expect = 6.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 2 VHRELGNLLEEFSTLALSSEQPEKTT 27
V R++ +LL+E + + S+QP T
Sbjct: 52 VERKIQSLLDELAEVLFQSKQPNDLT 77
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 22.6 bits (46), Expect = 6.4
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 14 STLALSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAA 52
+T+ + PE N K+ G LH DI A A
Sbjct: 187 ATIVMPQNTPEIKWRNVKRLGANVLLHGANFDIAKAECA 225
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 22.2 bits (45), Expect = 8.5
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 13 FSTLALSSEQPEKTTNNFKKPGILDFLHSRK 43
F + L S P T+NF LH R+
Sbjct: 126 FGSSMLGSSLPGNATSNFGSQASTSLLHPRR 156
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 22.2 bits (45), Expect = 8.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 18 LSSEQPEKTTNNFKKPGILDFLHSR 42
L E+PEK N+ K+ ++ H++
Sbjct: 558 LRKEKPEKKNNSTKQKDLITVSHNK 582
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 22.2 bits (45), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 45 DIPNATAAAVNIVRMYIE 62
D+PNA VNI R++ +
Sbjct: 136 DLPNAEEFLVNIFRLFFD 153
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,337
Number of Sequences: 5004
Number of extensions: 11068
Number of successful extensions: 44
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 15
length of query: 77
length of database: 2,362,478
effective HSP length: 57
effective length of query: 20
effective length of database: 2,077,250
effective search space: 41545000
effective search space used: 41545000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)
- SilkBase 1999-2023 -