Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001420-TA|BGIBMGA001420-PA|undefined
(77 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0141 - 4889020-4889191,4889401-4889675 28 1.1
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 27 1.5
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 26 3.3
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858... 26 4.4
02_05_1251 - 35249550-35249814,35249962-35250347,35250489-352505... 26 4.4
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 25 7.7
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 25 7.7
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 25 7.7
>09_02_0141 - 4889020-4889191,4889401-4889675
Length = 148
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 18 LSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAAAVNI 56
+++ Q + T N + +L+ K+D PNA AA V++
Sbjct: 25 VTTGQMLQPTTNLSSHHFIHYLNGTKKDYPNAVAAYVDV 63
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 25 KTTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYIETE 64
K + P IL FLHS + ++P+ A I YI TE
Sbjct: 71 KRLRTVRHPNILSFLHSTEAEVPDGPAMKHTI---YIVTE 107
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 6 LGNLLEEFSTLALSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAAAV 54
L +LE+F + Q +K NF+K L+ + +R+ T AA+
Sbjct: 56 LDRILEKFEQMEAKRRQEDKLNQNFQK---LEEIEARRSKASEETIAAI 101
>03_06_0474 -
34184002-34184660,34184755-34184887,34185071-34185886,
34186013-34186104,34186710-34186863
Length = 617
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 1 MVHRELGNLLEEFSTLALSSEQPEKTTNNFKKPGILDFLHSRKRDIPN 48
++ + L L++ L LS +PEK + K P + D + RD+ N
Sbjct: 554 LLEKILQMLVQRREELGLSKTKPEKKALDRKWPDLSDCIDRVGRDVEN 601
>02_05_1251 -
35249550-35249814,35249962-35250347,35250489-35250578,
35250672-35250955,35252213-35252429
Length = 413
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 8 NLLEEFSTLALSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAAAVN 55
N L + ST A +S E++++ F G+L+ + T AA+N
Sbjct: 245 NSLPDDSTHAAASNSSEESSDPFGLDGLLEHKSKKSEKAREKTVAALN 292
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 3 HRELGNLLEEFSTLALSSEQPEKTTNNFK 31
HR+L + +E L ++ +Q E+T NN K
Sbjct: 200 HRQLIDRSKELKILQVAVKQKEQTLNNLK 228
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 33 PGILDFLHSRKRDIPNATAAAVN-IVRMYIETEAAR 67
PG ++FL S D PN A V +++ Y+E E A+
Sbjct: 889 PGAVEFLGSLGYD-PNYGARPVKRVIQQYVENELAK 923
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 10 LEEFSTLALSSE--QPEKTTNNFKKPGILDFLHSRKRDIPNATAAAV--NIVRMYI 61
+E F T + E P+ + K +L FL K IP ATA A+ +++R I
Sbjct: 461 MESFFTSVIVPELQAPDWESEPMLKATVLRFLKEFKDQIPKATALALLPSVIRFLI 516
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.130 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,977
Number of Sequences: 37544
Number of extensions: 61977
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 8
length of query: 77
length of database: 14,793,348
effective HSP length: 56
effective length of query: 21
effective length of database: 12,690,884
effective search space: 266508564
effective search space used: 266508564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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