GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001420-TA|BGIBMGA001420-PA|undefined
         (77 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118564-1|AAM49933.1|  578|Drosophila melanogaster LD40028p pro...    26   7.3  
AY094948-1|AAM11301.1|  379|Drosophila melanogaster RH63980p pro...    26   7.3  
AE014296-940|AAF50792.3|  368|Drosophila melanogaster CG32423-PC...    26   7.3  
AE014296-937|AAF50788.5|  578|Drosophila melanogaster CG32423-PA...    26   7.3  

>AY118564-1|AAM49933.1|  578|Drosophila melanogaster LD40028p
           protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 4   RELGNLLEEFSTLALSSEQPEKTTNNFKKPGILDF 38
           ++L N+  ++ T+  +    +KTTN  K  G +DF
Sbjct: 245 KDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDF 279


>AY094948-1|AAM11301.1|  379|Drosophila melanogaster RH63980p
          protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 4  RELGNLLEEFSTLALSSEQPEKTTNNFKKPGILDF 38
          ++L N+  ++ T+  +    +KTTN  K  G +DF
Sbjct: 35 KDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDF 69


>AE014296-940|AAF50792.3|  368|Drosophila melanogaster CG32423-PC,
          isoform C protein.
          Length = 368

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 4  RELGNLLEEFSTLALSSEQPEKTTNNFKKPGILDF 38
          ++L N+  ++ T+  +    +KTTN  K  G +DF
Sbjct: 35 KDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDF 69


>AE014296-937|AAF50788.5|  578|Drosophila melanogaster CG32423-PA,
           isoform A protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 4   RELGNLLEEFSTLALSSEQPEKTTNNFKKPGILDF 38
           ++L N+  ++ T+  +    +KTTN  K  G +DF
Sbjct: 245 KDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDF 279


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.130    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,784
Number of Sequences: 52641
Number of extensions: 114677
Number of successful extensions: 331
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 4
length of query: 77
length of database: 24,830,863
effective HSP length: 57
effective length of query: 20
effective length of database: 21,830,326
effective search space: 436606520
effective search space used: 436606520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)