GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001420-TA|BGIBMGA001420-PA|undefined
         (77 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50510.1 68414.m05665 indigoidine synthase A family protein s...    31   0.12 
At3g24630.1 68416.m03093 hypothetical protein                          29   0.49 
At4g25180.1 68417.m03625 DNA-directed RNA polymerase III RPC4 fa...    26   2.6  
At1g71450.1 68414.m08255 AP2 domain-containing transcription fac...    26   3.5  
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P...    25   4.6  
At3g62770.2 68416.m07051 transport protein-related weak similari...    25   4.6  
At3g62770.1 68416.m07052 transport protein-related weak similari...    25   4.6  
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea...    25   4.6  
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea...    25   4.6  
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf...    25   6.0  
At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR ...    25   6.0  

>At1g50510.1 68414.m05665 indigoidine synthase A family protein
           similar to IndA protein (GI:7576263) [Erwinia
           chrysanthemi]; contains Pfam profile PF04227:
           Indigoidine synthase A like protein
          Length = 330

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 3   HRELGNLLEEFSTLALSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAAAVNI 56
           H   GNL+E  +  AL+  + +  T N + P    FL +R  ++   T+ A NI
Sbjct: 260 HSAAGNLIESATQRALTEAREQNVTGNAETP----FLLARVNELTGGTSLAANI 309


>At3g24630.1 68416.m03093 hypothetical protein
          Length = 724

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 8   NLLEEFSTLALSSEQPEKTT-NNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYIETEAA 66
           +L+     L +S+++P K++ N+  KP IL     R+  +   +  +  IVR     EAA
Sbjct: 250 SLIARLMGLDVSTQEPRKSSVNHIDKPDILKLSSERQEKVKKNSKESPEIVRCNSTREAA 309


>At4g25180.1 68417.m03625 DNA-directed RNA polymerase III RPC4
           family protein contains Pfam profile PF05132: RNA
           polymerase III RPC4
          Length = 295

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 11  EEFSTLALSSEQPEKTTNNFKKPGILDFLHSRKR 44
           EEF  +A + +  E T N+ ++ G+    HS+K+
Sbjct: 119 EEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQ 152


>At1g71450.1 68414.m08255 AP2 domain-containing transcription
          factor, putative similar to TINY GB:CAA64359; contains
          Pfam profile PF00847: AP2 domain
          Length = 183

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 25 KTTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYIETEAARVNYTEIAGT 76
          K  +  ++PG  + +     + P   A A ++   +     AR+N+ E+A +
Sbjct: 34 KWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASS 85


>At5g26360.1 68418.m03151 chaperonin, putative similar to
           SWISS-PROT:P50143- T-complex protein 1, gamma subunit
           (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 555

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/54 (22%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   ELGNLLEEFSTLALSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAAAVNIVR 58
           E+  + ++F +  +  ++P+  T   + P   DF++  +R++ +A + A NI++
Sbjct: 351 EVKKIGDDFFSFIVDCKEPKACTVLLRGPS-KDFINEVERNLQDAMSVARNIIK 403


>At3g62770.2 68416.m07051 transport protein-related weak
          similarity to Gsa12p [Pichia pastoris] GI:18307769;
          contains 1 WD-40 repeat (PF00400); putative proteins -
          different species
          Length = 432

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 8/19 (42%), Positives = 17/19 (89%)

Query: 10 LEEFSTLALSSEQPEKTTN 28
          L+ FS+++L+S++P +T+N
Sbjct: 41 LDSFSSMSLNSDEPNQTSN 59


>At3g62770.1 68416.m07052 transport protein-related weak
          similarity to Gsa12p [Pichia pastoris] GI:18307769;
          contains 1 WD-40 repeat (PF00400); putative proteins -
          different species
          Length = 307

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 8/19 (42%), Positives = 17/19 (89%)

Query: 10 LEEFSTLALSSEQPEKTTN 28
          L+ FS+++L+S++P +T+N
Sbjct: 41 LDSFSSMSLNSDEPNQTSN 59


>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 860

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 27  TNNFKKPGILDFLHSRK 43
           ++N    G+LDFLHS+K
Sbjct: 622 SHNLSLDGVLDFLHSKK 638


>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 900

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 27  TNNFKKPGILDFLHSRK 43
           ++N    G+LDFLHS+K
Sbjct: 662 SHNLSLDGVLDFLHSKK 678


>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 654

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 8   NLLEEFSTLALSSEQPEKTTNNFKK 32
           N L +   + ++ E+P+KTT +F+K
Sbjct: 276 NDLSQLKPVLVNEEKPKKTTESFRK 300


>At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 816

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 15  TLALSSEQPEKTTNNFKKPGILDFLHSRKRDIPNATAAAVNIVRMYIETEAARVNYTEIA 74
           TLA   E+ EKT +NF K  +   + +    +   T+  ++ V M ++    +V   +I 
Sbjct: 95  TLARKMEKLEKTISNFLKNEVFTHILADVHHLRADTSVRLDRVDMSLDRVIQQVGSMKIG 154

Query: 75  G 75
           G
Sbjct: 155 G 155


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.130    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,417
Number of Sequences: 28952
Number of extensions: 51598
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 11
length of query: 77
length of database: 12,070,560
effective HSP length: 57
effective length of query: 20
effective length of database: 10,420,296
effective search space: 208405920
effective search space used: 208405920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)