Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001418-TA|BGIBMGA001418-PA|undefined
         (80 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.69 
SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)                28   0.91 
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    26   3.7  
SB_39043| Best HMM Match : Pkinase (HMM E-Value=2.7e-09)               26   4.9  
SB_24175| Best HMM Match : Pkinase (HMM E-Value=6.2e-07)               26   4.9  

>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 16  LVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPVGSEPPFSHKT 60
           L ++ I DD+  R  R S +S    GV   L     S P  SH T
Sbjct: 69  LALKQIADDKEMRKSRTSYKSPPTTGVATTLPTATSSSPADSHLT 113


>SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)
          Length = 433

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 30  PRCSVRSSGCIGVVGVLTYPVGSEPPFSHKTSYLGL 65
           PR  V+   C+ +V VL   + + P +  +TS  G+
Sbjct: 135 PRKGVQGMACLALVAVLILSISTHPAYGQQTSQDGM 170


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 30  PRCSVRSSGCIGVVGVLTYPVGSEPPFSHKTSYLGLIEK---LKKGATNPY 77
           P  S  + G  G+VG   +P  S    +  TSYLG        + G T+P+
Sbjct: 131 PLHSSTADGDYGLVGAAAFPGASTAHATSTTSYLGASSSPPVYQSGTTSPH 181


>SB_39043| Best HMM Match : Pkinase (HMM E-Value=2.7e-09)
          Length = 239

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 13  PDRLVVEVIVDDQRRRTPRCSVRSSGCIGVV 43
           P+ +++EV   D+  + PRCS R S     +
Sbjct: 95  PENILLEVEPADKSSKRPRCSERKSAAFSSI 125


>SB_24175| Best HMM Match : Pkinase (HMM E-Value=6.2e-07)
          Length = 268

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 13  PDRLVVEVIVDDQRRRTPRCSVRSSGCIGVV 43
           P+ +++EV   D+  + PRCS R S     +
Sbjct: 187 PENILLEVEPADKSSKRPRCSERKSAAFPAI 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,228
Number of Sequences: 59808
Number of extensions: 105268
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 5
length of query: 80
length of database: 16,821,457
effective HSP length: 58
effective length of query: 22
effective length of database: 13,352,593
effective search space: 293757046
effective search space used: 293757046
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)