GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001418-TA|BGIBMGA001418-PA|undefined
         (80 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1SEA2 Cluster: Phage integrase family protein; n=1; No...    32   1.9  
UniRef50_UPI0000F2E870 Cluster: PREDICTED: hypothetical protein;...    31   4.4  
UniRef50_Q22AY1 Cluster: Protein kinase domain containing protei...    31   5.9  

>UniRef50_A1SEA2 Cluster: Phage integrase family protein; n=1;
           Nocardioides sp. JS614|Rep: Phage integrase family
           protein - Nocardioides sp. (strain BAA-499 / JS614)
          Length = 412

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 26  RRRTPRCSVRSSGCIGVVGVLTYPVGSEPPFSHKTSYLGLIEKLKKGAT 74
           R R PR  + +SG  GV+  L+   G EP  +H+  +   ++ L  G T
Sbjct: 325 RLRAPRQMMTASGTSGVIARLSSMAGIEPIHAHRLRHTAAMDVLAAGGT 373


>UniRef50_UPI0000F2E870 Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 314

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 28  RTPRCSVRSSGCIGVVGVLTYPVGSEPP 55
           R  RC + + G  GV+GV T+P+G  PP
Sbjct: 238 RGRRCPLAAPGREGVLGVRTFPLGGGPP 265


>UniRef50_Q22AY1 Cluster: Protein kinase domain containing protein;
           n=1; Tetrahymena thermophila SB210|Rep: Protein kinase
           domain containing protein - Tetrahymena thermophila
           SB210
          Length = 1203

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 10  VGTPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPVGSEPPFSH 58
           VGTP  +  EVI+D     +  C + S GC  ++ +LT      PP+S+
Sbjct: 177 VGTPYWMAPEVIIDSDGHISTSCDIWSLGCT-IIELLT----GNPPYSY 220


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,651,578
Number of Sequences: 1657284
Number of extensions: 3266267
Number of successful extensions: 5510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5508
Number of HSP's gapped (non-prelim): 3
length of query: 80
length of database: 575,637,011
effective HSP length: 59
effective length of query: 21
effective length of database: 477,857,255
effective search space: 10035002355
effective search space used: 10035002355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)