GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001418-TA|BGIBMGA001418-PA|undefined
         (80 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   1.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   1.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   1.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    19   6.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    19   8.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    19   8.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    19   8.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 17  VVEVIVDDQRRRTPRCSVRSSGC 39
           +++ + D     TP C V+SS C
Sbjct: 128 ILQNLADITPNVTPNCDVKSSVC 150


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 17  VVEVIVDDQRRRTPRCSVRSSGC 39
           +++ + D     TP C V+SS C
Sbjct: 128 ILQNLADITPNVTPNCDVKSSVC 150


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 17  VVEVIVDDQRRRTPRCSVRSSGC 39
           +++ + D     TP C V+SS C
Sbjct: 128 ILQNLADITPNVTPNCDVKSSVC 150


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.0 bits (37), Expect = 6.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 2   QRQTRGVTVGTPDR 15
           Q Q   VTVG P R
Sbjct: 521 QEQPNVVTVGNPSR 534


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
          castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 18.6 bits (36), Expect = 8.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 29 TPRCSVRSSGCIGVVGVLTY 48
          +PR S  SS   G  G LTY
Sbjct: 69 SPRISSPSSTKSGSPGFLTY 88


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis
          triggering hormone receptorisoform B protein.
          Length = 451

 Score = 18.6 bits (36), Expect = 8.6
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 39 CIGVVGVLTYPV 50
          C+GV+G +  P+
Sbjct: 80 CLGVIGNVMVPI 91


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis
          triggering hormone receptorisoform A protein.
          Length = 434

 Score = 18.6 bits (36), Expect = 8.6
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 39 CIGVVGVLTYPV 50
          C+GV+G +  P+
Sbjct: 80 CLGVIGNVMVPI 91


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,505
Number of Sequences: 317
Number of extensions: 737
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 80
length of database: 114,650
effective HSP length: 46
effective length of query: 34
effective length of database: 100,068
effective search space:  3402312
effective search space used:  3402312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)