Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001418-TA|BGIBMGA001418-PA|undefined
(80 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330... 28 1.1
12_02_0727 - 22564183-22564815,22564906-22565073,22565264-225653... 27 1.9
01_01_0613 - 4571689-4572348 27 1.9
05_07_0036 - 27226777-27227103 26 3.3
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 26 4.4
12_01_1076 + 11184047-11184270,11186178-11186352,11186554-111866... 25 5.8
01_01_0455 - 3379727-3381058 25 5.8
01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667 25 5.8
09_03_0059 + 11961088-11961474,11962039-11962131 25 7.7
02_05_1008 - 33461225-33462334 25 7.7
02_04_0037 + 19104367-19104978 25 7.7
>07_03_0251 +
15831712-15832127,15832203-15832344,15832692-15833056,
15833134-15833293,15833699-15834036,15834138-15834315,
15834454-15834987,15835176-15836291
Length = 1082
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 12 TPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPVGSEPPFS-HKTSYLGL 65
TP++L+ E IVD Q R P G IG+ G +T+PVG S K S LGL
Sbjct: 907 TPEKLI-EQIVDLQERGAP------VGGIGLQGHITHPVGDIICDSLDKLSILGL 954
>12_02_0727 -
22564183-22564815,22564906-22565073,22565264-22565382,
22565796-22565898,22566702-22566974,22567088-22567279,
22568289-22568615
Length = 604
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 26 RRRTPRCSVRS-SGCIGVVGVLTYPVGSEPPFSHKTSYLGLIEKLKKG 72
R R+ +C + G I V LT G+E PF H + G + KL G
Sbjct: 183 RDRSAKCFLLFIRGAISVKDRLTAATGAEVPFHHVVTQDGHVSKLVLG 230
>01_01_0613 - 4571689-4572348
Length = 219
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 38 GCIGVVGVLTYPVGSEPPFS 57
GC+G G L YP + PP+S
Sbjct: 167 GCVGGGGHLPYPTSAAPPWS 186
>05_07_0036 - 27226777-27227103
Length = 108
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 40 IGVVGVLTYPVGSEPPFSHKTSYLGLIEKLKKGATNP 76
+G++ +L P ++P F T+ +EKLK +NP
Sbjct: 60 LGMIALLLSPYAAQPLFPVATTANLAVEKLKHRFSNP 96
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 16 LVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPV-GSEPPF 56
+ VE + + R R R + G GV GV+ +PV GS PF
Sbjct: 45 VAVEHLRERDRARHGRRGLLGGGGGGVAGVVDFPVEGSANPF 86
>12_01_1076 +
11184047-11184270,11186178-11186352,11186554-11186637,
11186712-11186953,11187029-11187266,11187814-11187893,
11187968-11188052,11188148-11188279,11188358-11188471,
11189550-11189594,11189840-11189924,11190043-11190102,
11190178-11190317
Length = 567
Score = 25.4 bits (53), Expect = 5.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 9 TVGTPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTY-PVGSEPPFS 57
TVGTPD + EV++ ++ C + S G I ++ Y P SE P S
Sbjct: 325 TVGTPDYIAPEVLL--KKGYGMECDLWSLGAIMYEMLVGYPPFYSEDPMS 372
>01_01_0455 - 3379727-3381058
Length = 443
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 7 GVTVGTPDRLVVEVIVDDQRRRTP--RCSVRS 36
GVTV PD +V EV+V R RC+ RS
Sbjct: 20 GVTVTLPDHVVTEVLVRLPARSLARLRCTCRS 51
>01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667
Length = 567
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 12 TPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPVG 51
TP+R V E++ D Q+R + G IGV G +T+PVG
Sbjct: 391 TPERYV-ELVTDLQKRGA------AVGGIGVQGHVTHPVG 423
>09_03_0059 + 11961088-11961474,11962039-11962131
Length = 159
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 27 RRTPRCSVRSSGCIG--VVGVLTYPVGSEP 54
R+ RC SSGC+G +V V+T G P
Sbjct: 47 RQDIRCQFISSGCVGNRMVAVVTSDGGETP 76
>02_05_1008 - 33461225-33462334
Length = 369
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 33 SVRSSGCIGVVGVLTYP--VGSEPPFSHKTSYLGLIEKLKKGA 73
S SSG + GV T P VGS PP S L + ++ GA
Sbjct: 61 STSSSGSSSLGGVPTPPNSVGSAPPAPPPLSELERVRRIGSGA 103
>02_04_0037 + 19104367-19104978
Length = 203
Score = 25.0 bits (52), Expect = 7.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 21 IVDDQRRRTPRCSVRSS 37
+ D++RRR P C R+S
Sbjct: 178 VADEERRRAPECKSRAS 194
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.138 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,067
Number of Sequences: 37544
Number of extensions: 92137
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 11
length of query: 80
length of database: 14,793,348
effective HSP length: 59
effective length of query: 21
effective length of database: 12,578,252
effective search space: 264143292
effective search space used: 264143292
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -