GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001418-TA|BGIBMGA001418-PA|undefined
         (80 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   1.0  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    21   4.1  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    21   7.1  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 16/54 (29%), Positives = 20/54 (37%)

Query: 1   MQRQTRGVTVGTPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPVGSEP 54
           M R     T    DR+V+E I+ D     P C       +G V   T   G  P
Sbjct: 419 MSRLRGSRTPSEADRVVLERIISDLFPEHPPCDWSQLSNVGSVEGATTTAGIAP 472


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 51  GSEPPFSHKTSYLGL 65
           G+E PFS    YLG+
Sbjct: 736 GTEVPFSRTLKYLGV 750


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 52  SEPPFSHKTSYLGLIEKLKKGATN 75
           S+P  +H T+  G+ EK+    TN
Sbjct: 237 SDPVLNHDTTNTGIAEKVWLYFTN 260


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,332
Number of Sequences: 2123
Number of extensions: 3381
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 80
length of database: 516,269
effective HSP length: 52
effective length of query: 28
effective length of database: 405,873
effective search space: 11364444
effective search space used: 11364444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)