GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001418-TA|BGIBMGA001418-PA|undefined
         (80 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065196-1|AAH65196.1|  761|Homo sapiens deleted in bladder canc...    29   1.8  
BC021560-1|AAH21560.1|  320|Homo sapiens DBC1 protein protein.         29   1.8  
AL353773-2|CAI16001.1|  320|Homo sapiens deleted in bladder canc...    29   1.8  
AL353773-1|CAI16000.1|  761|Homo sapiens deleted in bladder canc...    29   1.8  
AL138894-2|CAH72028.1|  320|Homo sapiens deleted in bladder canc...    29   1.8  
AL138894-1|CAH72027.1|  761|Homo sapiens deleted in bladder canc...    29   1.8  
AF027734-1|AAC39691.1|  761|Homo sapiens IB3089A protein.              29   1.8  

>BC065196-1|AAH65196.1|  761|Homo sapiens deleted in bladder
          cancer 1 protein.
          Length = 761

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 50 VGSEPPFSHKTSYLGLIEKLKKGATNPYRL 79
          +    PF H  SYL  +E+ ++G T  Y++
Sbjct: 42 ISDRGPFHHSRSYLSFVERHRQGFTTRYKI 71


>BC021560-1|AAH21560.1|  320|Homo sapiens DBC1 protein protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 50 VGSEPPFSHKTSYLGLIEKLKKGATNPYRL 79
          +    PF H  SYL  +E+ ++G T  Y++
Sbjct: 42 ISDRGPFHHSRSYLSFVERHRQGFTTRYKI 71


>AL353773-2|CAI16001.1|  320|Homo sapiens deleted in bladder
          cancer 1 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 50 VGSEPPFSHKTSYLGLIEKLKKGATNPYRL 79
          +    PF H  SYL  +E+ ++G T  Y++
Sbjct: 42 ISDRGPFHHSRSYLSFVERHRQGFTTRYKI 71


>AL353773-1|CAI16000.1|  761|Homo sapiens deleted in bladder
          cancer 1 protein.
          Length = 761

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 50 VGSEPPFSHKTSYLGLIEKLKKGATNPYRL 79
          +    PF H  SYL  +E+ ++G T  Y++
Sbjct: 42 ISDRGPFHHSRSYLSFVERHRQGFTTRYKI 71


>AL138894-2|CAH72028.1|  320|Homo sapiens deleted in bladder
          cancer 1 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 50 VGSEPPFSHKTSYLGLIEKLKKGATNPYRL 79
          +    PF H  SYL  +E+ ++G T  Y++
Sbjct: 42 ISDRGPFHHSRSYLSFVERHRQGFTTRYKI 71


>AL138894-1|CAH72027.1|  761|Homo sapiens deleted in bladder
          cancer 1 protein.
          Length = 761

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 50 VGSEPPFSHKTSYLGLIEKLKKGATNPYRL 79
          +    PF H  SYL  +E+ ++G T  Y++
Sbjct: 42 ISDRGPFHHSRSYLSFVERHRQGFTTRYKI 71


>AF027734-1|AAC39691.1|  761|Homo sapiens IB3089A protein.
          Length = 761

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 50 VGSEPPFSHKTSYLGLIEKLKKGATNPYRL 79
          +    PF H  SYL  +E+ ++G T  Y++
Sbjct: 42 ISDRGPFHHSRSYLSFVERHRQGFTTRYKI 71


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,343,638
Number of Sequences: 224733
Number of extensions: 429340
Number of successful extensions: 554
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 7
length of query: 80
length of database: 73,234,838
effective HSP length: 58
effective length of query: 22
effective length of database: 60,200,324
effective search space: 1324407128
effective search space used: 1324407128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)