GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001418-TA|BGIBMGA001418-PA|undefined
         (80 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199170-8|ABO33266.1|  469|Caenorhabditis elegans Hypothetical ...    29   0.39 
AL117207-18|CAB60407.2|  476|Caenorhabditis elegans Hypothetical...    28   0.68 
AB049441-1|BAB15803.1|  450|Caenorhabditis elegans CeCHK2 protein.     28   0.68 
AB041996-1|BAB20578.1|  476|Caenorhabditis elegans Ce-CDS-1 prot...    28   0.68 
AC006614-1|AAF39762.2|  472|Caenorhabditis elegans Hypothetical ...    26   2.7  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    25   4.8  
U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna ...    25   4.8  
U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...    25   4.8  
U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna ...    25   4.8  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    25   4.8  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U72347-1|AAD12189.1|  101|Caenorhabditis elegans putative transc...    25   8.4  
U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain fami...    25   8.4  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    25   8.4  

>AC199170-8|ABO33266.1|  469|Caenorhabditis elegans Hypothetical
           protein T08D2.7 protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 11  GTPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPVGSEPPFSHKTSYLGLIEKLK 70
           GTP     E++ +     TP+  + S GC     VL       PPFS + + L + E++ 
Sbjct: 337 GTPSYCAPEIVANQGVEYTPKVDIWSLGC-----VLFITFSGYPPFSEEYTDLKMDEQVL 391

Query: 71  KG 72
            G
Sbjct: 392 TG 393


>AL117207-18|CAB60407.2|  476|Caenorhabditis elegans Hypothetical
           protein Y60A3A.12 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 11  GTPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPVGSE 53
           GTP     E++ ++    TP+  + S GC+  +    YP  SE
Sbjct: 338 GTPSYNAPEIVANEGVEYTPKVDIWSLGCVLFITFSGYPPFSE 380


>AB049441-1|BAB15803.1|  450|Caenorhabditis elegans CeCHK2 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 11  GTPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPVGSE 53
           GTP     E++ ++    TP+  + S GC+  +    YP  SE
Sbjct: 312 GTPSYNAPEIVANEGVEYTPKVDIWSLGCVLFITFSGYPPFSE 354


>AB041996-1|BAB20578.1|  476|Caenorhabditis elegans Ce-CDS-1
           protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 11  GTPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVGVLTYPVGSE 53
           GTP     E++ ++    TP+  + S GC+  +    YP  SE
Sbjct: 338 GTPSYNAPEIVANEGVEYTPKVDIWSLGCVLFITFSGYPPFSE 380


>AC006614-1|AAF39762.2|  472|Caenorhabditis elegans Hypothetical
           protein C34H3.1 protein.
          Length = 472

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 10  VGTPDRLVVEVIVDDQRRRTPRCSVRSSGCIGVVG 44
           VG P R V E I       TP+ S++  GC+ + G
Sbjct: 179 VGVPHRAVNESIYVPNCLCTPKDSLKEDGCLKIPG 213


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 50  VGSEPPFSHKTSYLGLIEKLKKGATN 75
           +GSEPP S+ T   G  EK K G  N
Sbjct: 443 LGSEPPCSNGTIENGFSEKEKGGKKN 468


>U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform c protein.
          Length = 514

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 48  YPVGSEPPFSHKTSYLGLIEKLKKGATNP 76
           Y V   PPF     Y GL EKL  GAT P
Sbjct: 305 YEVDFTPPFKRVHMYDGLAEKL--GATLP 331


>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform b protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 48  YPVGSEPPFSHKTSYLGLIEKLKKGATNP 76
           Y V   PPF     Y GL EKL  GAT P
Sbjct: 387 YEVDFTPPFKRVHMYDGLAEKL--GATLP 413


>U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform a protein.
          Length = 572

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 48  YPVGSEPPFSHKTSYLGLIEKLKKGATNP 76
           Y V   PPF     Y GL EKL  GAT P
Sbjct: 363 YEVDFTPPFKRVHMYDGLAEKL--GATLP 389


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 50  VGSEPPFSHKTSYLGLIEKLKKGATN 75
           +GSEPP S+ T   G  EK K G  N
Sbjct: 443 LGSEPPCSNGTIENGFSEKEKGGKKN 468


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 7    GVTVGTPDRLVVEVIVDDQRRRTPRCSVRSSGCIG 41
            G T   PD+ V   ++ DQ+   P C+ R   C G
Sbjct: 3605 GYTCSCPDQFV---LLSDQKTCEPNCTERQFACGG 3636


>U72347-1|AAD12189.1|  101|Caenorhabditis elegans putative
          transcription factor LIM-6 protein.
          Length = 101

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 9  TVGTPDRLVVEVIVDDQRRRTPR 31
          T+  PD L+ EV+  +  R+TP+
Sbjct: 42 TISNPDPLMEEVVRSEIHRKTPK 64


>U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain family
           protein 6 protein.
          Length = 287

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 9   TVGTPDRLVVEVIVDDQRRRTPR 31
           T+  PD L+ EV+  +  R+TP+
Sbjct: 142 TISNPDPLMEEVVRSEIHRKTPK 164


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 7    GVTVGTPDRLVVEVIVDDQRRRTPRCSVRSSGCIG 41
            G T   PD+ V   ++ DQ+   P C+ R   C G
Sbjct: 3605 GYTCSCPDQFV---LLSDQKTCEPNCTERQFACGG 3636


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,575
Number of Sequences: 27539
Number of extensions: 71505
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 14
length of query: 80
length of database: 12,573,161
effective HSP length: 60
effective length of query: 20
effective length of database: 10,920,821
effective search space: 218416420
effective search space used: 218416420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)