GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001418-TA|BGIBMGA001418-PA|undefined
         (80 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) ...    25   4.8  
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    25   4.8  
At5g46850.1 68418.m05773 expressed protein  ; expression support...    25   6.3  

>At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) low
           similarity to SP|Q56239 DNA mismatch repair protein mutS
           {Thermus aquaticus}; contains Pfam profiles PF05190:
           MutS family domain IV, PF01624: MutS domain I, PF01541:
           Endo/excinuclease amino terminal domain
          Length = 1118

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 33  SVRSSGCIGVVGVLTYPVGSEPPFSHKTSYLGLIEKLKKGATNP 76
           S+ +SGC+G+V    + + S P  +   +Y  +  +  +G T P
Sbjct: 868 SLDTSGCLGIVSTHLHGIFSLPLTAKNITYKAMGAENVEGQTKP 911


>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 29  TPRCSV--RSSGCIGVVGVLTYPVGSEPPFSHKTSYL 63
           T +C +  R  G I ++   +YP+ +  PFS  T+ L
Sbjct: 146 TRKCEIDLRKEGIIRIISPASYPIITFGPFSSPTAVL 182


>At5g46850.1 68418.m05773 expressed protein  ; expression supported
           by MPSS
          Length = 296

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 8   VTVGTPDRLVVEVIVDDQRRRTPRCSVRSSG 38
           V  G PD  +    V +QRR   RC V S G
Sbjct: 208 VEFGEPDLFLCSSHVQNQRRERRRCLVLSIG 238


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,445
Number of Sequences: 28952
Number of extensions: 70448
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 3
length of query: 80
length of database: 12,070,560
effective HSP length: 59
effective length of query: 21
effective length of database: 10,362,392
effective search space: 217610232
effective search space used: 217610232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)