GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001417-TA|BGIBMGA001417-PA|IPR002867|Zinc finger,
C6HC-type, IPR001841|Zinc finger, RING-type
         (503 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   2.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   2.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   2.8  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    22   8.7  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 343 EAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFESKLYASVKEKMEEMQQHNMSW 399
           E K  R A  R +       F+ NRY+   + +     L  S ++     Q   M W
Sbjct: 232 EPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKW 288


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 4/32 (12%)

Query: 300 KDGGCNHMVCKN----QNCKADFCWVCLGPWE 327
           KD  C+H  CKN    Q+    F   C   WE
Sbjct: 144 KDSHCDHTTCKNGGTCQDLGKTFMCRCPPDWE 175


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 343 EAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFESKLYASVKEKMEEMQQHNMSW 399
           E K  R A  R +       F+ NRY+   + +     L  S ++     Q   M W
Sbjct: 232 EPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKW 288


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
          protein 19 protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 46 EVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMER 92
          E+L++E ++++  +CI +            R+L +  K D  K  E+
Sbjct: 30 EILASERLLKNYFNCIMDRGACTPDADELKRVLPDALKSDCAKCSEK 76


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.134    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,639
Number of Sequences: 317
Number of extensions: 5279
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 4
length of query: 503
length of database: 114,650
effective HSP length: 60
effective length of query: 443
effective length of database: 95,630
effective search space: 42364090
effective search space used: 42364090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)