Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001417-TA|BGIBMGA001417-PA|IPR002867|Zinc finger,
C6HC-type, IPR001841|Zinc finger, RING-type
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 427 e-120
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 50 8e-07
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 36 0.017
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 34 0.040
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.053
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.86
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 30 0.86
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 29 1.5
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 29 1.5
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 29 2.0
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 2.0
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 29 2.0
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 2.6
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 2.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 2.6
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 27 4.6
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 27 4.6
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 4.6
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 6.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 6.1
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 6.1
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 8.0
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 8.0
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 27 8.0
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 8.0
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 427 bits (1052), Expect = e-120
Identities = 206/488 (42%), Positives = 293/488 (60%), Gaps = 23/488 (4%)
Query: 21 DVDFAMDVETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLN 80
D D +D + + ++ Y V+S ++ + + I ++ +++++ L
Sbjct: 29 DEDAEIDDDGFTVERKRRRAHSVSYRVVSVRDLRASLNEKINQLTSIIDLTREQVLGLYR 88
Query: 81 HFKWDKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGMEECEICFSVL 140
+FKW++E+L+ER+ D ++ L +K + +R CEIC+
Sbjct: 89 YFKWNRERLLERYIDAPEESL----------QKAGVGLSGSKQREVVHHEGTCEICYDEG 138
Query: 141 PTSIMTGLECGHRFCTQCWCEYLTTKIMEEGLGQTIACAAHACDILVDDATVMRLVRDSR 200
+ EC H FC C+ +YL ++I E I C +C +V ++ +++ D +
Sbjct: 139 CLPFFSA-ECDHEFCLACYRQYLDSRISEGE--SVIQCPEESCTQIVSIQSITKVL-DEK 194
Query: 201 VKLKYQHIITNSFVECNRLLRWCPSPDCSNAIKVAYVEAA------PVTCRCGHTFCFAC 254
+Y ++ SFV+ N LRWCP+PDC AI+ +A+ VTC CG FCF C
Sbjct: 195 SLDRYHRLLDRSFVDDNDHLRWCPAPDCEFAIECHVTQASLSSVVPTVTCNCGKQFCFGC 254
Query: 255 GENWHDPVRCCLLRKWIKKCDDDSETSNWIAANTKECPKCNVTIEKDGGCNHMVCKNQNC 314
G + H P C L++ W++KC DDSET+NWI ANTKECPKC+ TIEK+GGCNHM CK C
Sbjct: 255 GHDNHQPTICPLVKIWLQKCQDDSETANWIHANTKECPKCSTTIEKNGGCNHMTCKK--C 312
Query: 315 KADFCWVCLGPWEPHGSSWYSCNRYDEDEAKAARDAQERSRAALQRYLFYCNRYMNHMQS 374
K +FCWVCLGPW HG++WY+CNRY+E + +ARD+Q +SRA+L+RYL Y NR+ NH QS
Sbjct: 313 KYEFCWVCLGPWTEHGNNWYTCNRYEEKSSTSARDSQSKSRASLERYLHYYNRFANHEQS 372
Query: 375 LRFESKLYASVKEKMEEMQ-QHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNN 433
+ + +LY ++M +MQ N+SW+EVQFLK AVDIL QCRQTL +TY FAYYL +NN
Sbjct: 373 AKLDHELYEHTHKRMTQMQVDSNLSWVEVQFLKNAVDILFQCRQTLKWTYAFAYYLARNN 432
Query: 434 QSVIFEDNQRDLESATETLSEYLERDITSENLADIKQKVQDKYRYCDSRRKVLLEHVHEG 493
Q+ IFEDNQRDLE A E LSE ER +L+ KQ+V DK Y SRR VLL+ G
Sbjct: 433 QTEIFEDNQRDLELAVENLSELCERPCQDCSLSVFKQRVLDKTVYVRSRRDVLLDDTARG 492
Query: 494 YEKDCWDY 501
+ W+Y
Sbjct: 493 LAEGRWEY 500
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 50.0 bits (114), Expect = 8e-07
Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 4/145 (2%)
Query: 132 ECEICFSVLP-TSIMTGLECGHRFCTQCWCEYLTTKIMEEGLGQTIACAAHACDILVDDA 190
+C +CF T CGH C C +Y T I +EG+ I C C
Sbjct: 173 QCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDYYTMCI-QEGMFSQIKCIDLDCGKDAPVL 231
Query: 191 TVMRLVRDSRVKL--KYQHIITNSFVECNRLLRWCPSPDCSNAIKVAYVEAAPVTCRCGH 248
T+ L V+L +Y+ + E + + +CP C K + + +C
Sbjct: 232 TLKELESIVGVQLTNRYKELEEKRRYENDSNIIFCPRSFCQGPSKRDPGQKLAICQKCDF 291
Query: 249 TFCFACGENWHDPVRCCLLRKWIKK 273
FC C WH + C L KK
Sbjct: 292 AFCSFCQATWHGDLSPCKLEGDSKK 316
Score = 47.6 bits (108), Expect = 4e-06
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 266 LLRKWIKKCDDDSETSNWIAANTKECPKCNVTIEKDGGCNHMVCKNQNCKADFCWVC 322
++ + +++ +D E W+ N + CP C+ +E+ GC HM C C FC++C
Sbjct: 343 IIDRLVEQVKNDEEAEKWVLLNGQRCPTCDRVVERIDGCCHMNCL---CGTHFCFLC 396
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 242 VTCRCGHTFCFACG---------ENWHDPVRCCLLRKWIKKCDDDSETSNW 283
+ C CG FCF CG ++++DPV C + + + NW
Sbjct: 384 MNCLCGTHFCFLCGAYLMEQNPYKHFNDPVSSCYGMLFASAAEKQRFSENW 434
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 35.5 bits (78), Expect = 0.017
Identities = 46/174 (26%), Positives = 66/174 (37%), Gaps = 32/174 (18%)
Query: 160 CEYLTTKIMEEGLGQTIACAAHACDILVDDATVMRLVRDSR-VKLKYQHIITNSFVE--- 215
CE L T ++ G Q C C T RL R + KL+Y H++T F E
Sbjct: 531 CERLCTILLSCGRHQ---CNKKCCSGYSKAQT--RLARRPKGAKLRY-HLLTEEFEEEHI 584
Query: 216 ----CNRLL--------RWCPSPDCSNAIKVAYVEAAPVTCRCGHTFCF---ACGENWHD 260
CN+ L C C ++ ++ E + C CG T + ACG D
Sbjct: 585 CFRPCNKKLSCGNHFCQHMCHRGPCPRCLEASFEE---LPCTCGRTRLYPPVACGTPIPD 641
Query: 261 PVRCCLLRKWIKKCDDDSETSNWIAANTKECPKCNVTIEKDGGCNHMVCKNQNC 314
C+L K C N ++ CP C ++K C + +NQ C
Sbjct: 642 CPYLCVLPK---SCHHPQVKHN-CHPTSEPCPPCPYFVKKRCLCGKHILENQPC 691
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 34.3 bits (75), Expect = 0.040
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 132 ECEICFSVLPTSIMTGLECGHRFCTQCWCEYLT 164
EC+ICF +L +++ CGH FC C + LT
Sbjct: 168 ECQICFGMLYDPVVS--PCGHTFCGPCLMQALT 198
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 241 PVTCRCGHTFCFAC 254
PV CGHTFC C
Sbjct: 179 PVVSPCGHTFCGPC 192
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.9 bits (74), Expect = 0.053
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 241 PVTCRCGHTFCFACGENWHDPVRCC 265
P T CGHT+C+ C NW + C
Sbjct: 95 PFTTHCGHTYCYECLLNWLKESKSC 119
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 132 ECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 163
EC IC L T CGH +C +C +L
Sbjct: 84 ECPICTEALQRPFTT--HCGHTYCYECLLNWL 113
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 29.9 bits (64), Expect = 0.86
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 241 PVTCRCGHTFCFAC 254
P T CGHT+C+AC
Sbjct: 208 PYTTDCGHTYCYAC 221
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.86
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 393 QQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVIFEDNQRDLESATETL 452
Q++NM W EV L + ++ Q +++L+ YV + N+ + + + + A L
Sbjct: 304 QKYNMQWHEVHCLNR---VIAQVKKSLILCYVQCPSIEDFNKIWKNQASMNEWDWAESVL 360
Query: 453 SEYLERDIT 461
+YL R +T
Sbjct: 361 RQYLIRCVT 369
>SPCC285.11 |ucp10||UBA/UAS domain protein
Ucp10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 427
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 59 DCIKEVNTVVEIPATTTRILLNHFKWDKEKLME 91
+ I E+ +++PA T + +L F WD ++ +E
Sbjct: 8 EAIDELRNSLDVPADTAQSVLESFNWDVQEAIE 40
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 436 VIFEDNQRDLESATETLSEYLERDITSENLA--DIKQKVQDKYRYCDSRRKVLLEHVHEG 493
VI+E++ D+E+A + + ++RD+ + L ++ +V D R +R L++ +
Sbjct: 641 VIYEEDDEDVEAAEKFYTNDIQRDLAKKALECNKLENRVYDLVRSSYEQRNFLIKKISHA 700
Query: 494 YE 495
++
Sbjct: 701 WK 702
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 28.7 bits (61), Expect = 2.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 241 PVTCRCGHTFCFACGENW 258
P CGH FC++C W
Sbjct: 266 PAATECGHIFCWSCINGW 283
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 129 GMEECEICFSVLPTSIMTGLECGHRFCTQC 158
G +C +C + T ECGH FC C
Sbjct: 252 GNRKCSLCMEFIHCPAAT--ECGHIFCWSC 279
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 129 GMEECEICFSVLPTS-IMTGLECG---HRFCTQC 158
G+EEC IC+SVL + CG H+F C
Sbjct: 1554 GVEECAICYSVLSVERTLPNKRCGTCRHKFHASC 1587
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 133 CEICFSVLPTSIMTGLECGHRFCTQCWCEYLTTKIMEEGLGQTIACAAHACDILVD 188
C+IC V +I + C H FC C EY+ G G+ + C + + +D
Sbjct: 711 CKICDEVAQDAIES--RCHHTFCRLCVTEYINA----AGDGENVNCPSCFIPLSID 760
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 439 EDNQRDLESATETLSEYLERDITSENLADIKQKVQDKYRYCDSRRKVLLEHVHEGYEKDC 498
++ QR E + E D T+E++A +K ++Q +Y D + L E +E
Sbjct: 964 KNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKSRLRE-----FENAL 1018
Query: 499 WD 500
WD
Sbjct: 1019 WD 1020
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 129 GMEECEIC-FSVLPTSIMTGLECGHRFCTQC 158
GM +C +C FS + ++ CGH FC+ C
Sbjct: 635 GMLKCSVCNFSNWKSKLIPN--CGHAFCSNC 663
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.3 bits (60), Expect = 2.6
Identities = 25/109 (22%), Positives = 58/109 (53%), Gaps = 10/109 (9%)
Query: 373 QSLRFESKL-YASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRK 431
++ + E K+ Y S +E+ Q + ++FL+ A++ + + + +L K
Sbjct: 221 KNFKLEEKVDYLSKVNDVEQSQNVKVFTERIRFLENALEKVQREKDSLSTEMEED----K 276
Query: 432 NNQSVIFEDNQRDLESATETLSEYLE--RDITSE---NLADIKQKVQDK 475
+N+ V +E R L++ + LSE L+ +D+ +E +A +K+++++K
Sbjct: 277 SNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEEK 325
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 441 NQRDLESATETLSEYLERDITSENLADIKQKVQDKY 476
N + + TETLSEY DI L ++K + + +Y
Sbjct: 255 NWYQVTNPTETLSEYSVEDIPESELNEMKLRHRKRY 290
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 132 ECEICFSVLPTSIMTGLECGHRFCTQCWCE 161
EC ICF P++ C C++C+ E
Sbjct: 150 ECPICFLYYPSNFNYTRCCAQPICSECFVE 179
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 85 DKEKLMERFYDGDQDQLFSEARVINPFRK 113
D K+ +RFYD D + F E+ PF K
Sbjct: 290 DDGKMTKRFYDLDGNDFFWESNASKPFPK 318
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 120 KLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQCWCEYL 163
K+P C IC ++T C H FC+ C +YL
Sbjct: 16 KIPSLKGLDSSLRCLICHEYFRAPLITS--CSHTFCSFCIRDYL 57
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 250 FCFACGENWHDPVRCCLLRKWI-KKCDDDSETSNWIAANTKECPKCN 295
F + C + P LLR+ + K DD++ +S+ A + + C +CN
Sbjct: 1299 FSYICLQKLFYPRDIDLLRRRLCAKSDDETSSSSSFATDIEMCEQCN 1345
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 432 NNQSVIFEDNQRDLESATETLSEYLERDITSENLADIK----QKVQDKYRYCDSRRK 484
N+ S+I ++ + ETL E L DIT ++L ++ +++Q+ + D+ +K
Sbjct: 5 NDNSLIIKNIGNNEFKFVETLHELLPEDITYDDLGSLRLSLSERLQESVKKLDANKK 61
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 119 PKLPRRISTSGMEECEICFSVLPTSIMTGLECGHRFCTQC 158
PKLP I+ S + C+IC + + L G FC C
Sbjct: 243 PKLPFEINVSTTDICKICGEKIKNPAV--LSTGFVFCYPC 280
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 26.6 bits (56), Expect = 8.0
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 399 WIEVQ---FLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVIFEDNQRDLESATETLSEY 455
W+E + ++ + L ++ L A+ L ++ S+ F N RD + E +S Y
Sbjct: 566 WLEEECGNLAREGLRTLVVAKKDLSAEEYSAFSLAHSDASLSFS-NSRD-KKMEEIVSRY 623
Query: 456 LERDITSENLADIKQKVQ 473
LE D+ L ++ K+Q
Sbjct: 624 LENDMDLLGLTGVEDKLQ 641
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 41 EEYPYEVLSTEE--IVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQ 98
EE+ + L E ++++M++ + E+N + +P ++ +L +W E Y G +
Sbjct: 12 EEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEW-CEHHKNDLYSGTE 70
Query: 99 DQ 100
++
Sbjct: 71 EE 72
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 8.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 245 RCGHTFCFAC 254
RCGH +CF+C
Sbjct: 229 RCGHVYCFSC 238
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.134 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,709
Number of Sequences: 5004
Number of extensions: 98004
Number of successful extensions: 333
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 46
length of query: 503
length of database: 2,362,478
effective HSP length: 76
effective length of query: 427
effective length of database: 1,982,174
effective search space: 846388298
effective search space used: 846388298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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