GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001417-TA|BGIBMGA001417-PA|IPR002867|Zinc finger,
C6HC-type, IPR001841|Zinc finger, RING-type
         (503 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein prot...    27   0.89 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   1.2  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    26   2.0  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    26   2.0  

>AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein
           protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 0.89
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 74  TTRILLNHFKWDKE 87
           T  +LL+HFKW+KE
Sbjct: 311 TANLLLDHFKWEKE 324


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 431 KNNQSVIFEDNQRDLESATETLSEYLERDITSENLADIKQKVQDKYRYCDSRRKV 485
           K+N+  + E   +DLE       EYL+++ T     +  Q++Q KY  C+ +RK+
Sbjct: 272 KHNRCKLAEREMKDLEKPKTEAVEYLKQENTLTRTRN--QQIQ-KY-LCEQKRKI 322



 Score = 25.0 bits (52), Expect = 4.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 442 QRDLESATETLSEYLERDITSENLADIKQKVQDKYRYCDSRRKVLLEHV 490
           + +++   E +S    ++ T +N  D   KVQ   R  + RRK  LE +
Sbjct: 358 KEEIKQYDELVSAKESKESTLKNSLDKFAKVQANMRATNERRKKTLEQI 406


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 244 CRCGHTFCFACGENWHDPVRCCLLRKWIKKCDDDSETSNWIAANTKECPKCNVTIEKDGG 303
           C CG   C  C E W  P   C  R   + C             T EC  C  T+ +DG 
Sbjct: 611 CVCGQ--C-ECREGWTGPA--CDCRASNETCMPPGGGELCSGHGTCECGTCRCTVTEDGR 665

Query: 304 CNHMVCK 310
                C+
Sbjct: 666 YTGRYCE 672


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1049

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 337  NRYDEDEAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFESKLYASVKEKMEEMQQHN 396
            NR       A +D  E     +   +F+C R+      L    ++       ++ M QH 
Sbjct: 964  NRASSSRCPACKDEDE----TVDHVMFHCPRFAEERLQLNESCRVEVGCSNLVQVMLQHT 1019

Query: 397  MSW 399
             SW
Sbjct: 1020 DSW 1022


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.134    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,948
Number of Sequences: 2123
Number of extensions: 23654
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 5
length of query: 503
length of database: 516,269
effective HSP length: 67
effective length of query: 436
effective length of database: 374,028
effective search space: 163076208
effective search space used: 163076208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)