Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001414-TA|BGIBMGA001414-PA|undefined
(235 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 35 0.012
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t... 30 0.25
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 27 3.1
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 4.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 5.5
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 7.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.2
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.2
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 7.2
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 25 9.6
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 9.6
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 162 RTVFLYETSPFPVVMSEIAIHGFKEVSDLSVCLKDIISRMMTHSVKVIGDFNRCIH 217
+ + LYE FP + S+ F E D + C+ D+I R + ++GD ++CI+
Sbjct: 465 KLLHLYE---FPNIFSKYDYILFDEAQDFTPCMVDLIYRQKHARIVIVGDAHQCIY 517
>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
transport factor Nxt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 57 NYMTVYLEQISLYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENVTLCLALGYQRVQ 116
+Y + + Y+Q DR + Y +ES++ G LQ V ++L +QRVQ
Sbjct: 3 DYNALATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQ 62
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 3.1
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 71 QVIIHDRKPRNGTYCKESIVKLLGENLQLADENVTLCLALGYQRVQRLPEKLQVHF--ET 128
++ +HD K + S + + G + + + +L L QR+ +L++ F
Sbjct: 293 RLALHDNKDIEYSQQPASAIFMYGSYILTSHPDNSLIL----QRLYSTNNELRIKFLGRL 348
Query: 129 LENLKKYSASKLFECQKQQQVGGNCSHES-QDLERTVFLYETSPFPVVMSEIAIHGFKEV 187
L ++ SKLF C + V NC+ DL T Y++ P++++ IH K V
Sbjct: 349 LGHVCGVQISKLFSCGRIVSVSKNCADICVWDLHDT--NYQSIVSPLMLTCTNIHN-KPV 405
Query: 188 SD 189
SD
Sbjct: 406 SD 407
>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 68 LYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENVTLCL 108
LYF I H + R +C E +K+ + +A V LC+
Sbjct: 7 LYFDAIRHANQRR---WCHECTIKIFRRSFDIARHTVHLCV 44
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 1 MSLNQQNTTDFQDNLINGYRALIADIQVRTQKSREDM 37
+S Q + F + L + Y L ADIQ QKSR ++
Sbjct: 899 VSSKQGSQAPFLNELESEYEKLEADIQEMAQKSRTEI 935
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 120 EKLQVHFETLENLKKYSASKLFECQKQQQVGGNCSH 155
E + + + NL+K S L E QK GN SH
Sbjct: 159 EPAKAYMSHISNLRKKSRLNLQEIQKNSLHTGNTSH 194
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 113 QRVQRLPEKLQVHFETLENLKKYSASKLFECQKQQQVGGNCSHESQDLER 162
Q R P+ E +NL+ S E Q+ Q + HESQ +R
Sbjct: 1423 QSRDRTPQSRSFTNENNDNLRSVSRHTRREPQQAQNLNARREHESQKSDR 1472
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 98 QLADENVTLCLALGYQRVQRLPEKLQV 124
Q D N T L Y++V+RLP++LQ+
Sbjct: 515 QSFDGNTTYA-QLSYKQVERLPQELQI 540
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 95 ENLQLADENVTLCLALGYQRVQRLPEKLQVHFETLENLKKYSASKLFECQKQ 146
ENL+ D + L L + V LPE +Q L L+K + + QK+
Sbjct: 48 ENLEAIDGKLGSLLHLTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKE 99
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 63 LEQISLYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENVTL 106
+E +SL +VI RN C+++I +N+ + E++TL
Sbjct: 31 IEALSLGIRVIDSAITYRNEKECEQAIQDFCHQNVNIKREDITL 74
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 1 MSLNQQNTTDFQDNLINGYRALIADIQVRTQKSREDMDTLVSQIK 45
++L+++ TDF DN + Y+A IQ R + D++ +V++ +
Sbjct: 478 LALDEEIPTDFVDNTLPKYKA----IQKRVGEYMGDVNNIVAEYR 518
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.134 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 980,592
Number of Sequences: 5004
Number of extensions: 38201
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 11
length of query: 235
length of database: 2,362,478
effective HSP length: 71
effective length of query: 164
effective length of database: 2,007,194
effective search space: 329179816
effective search space used: 329179816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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