Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001414-TA|BGIBMGA001414-PA|undefined
         (235 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical p...    29   2.2  
U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    29   2.2  
CU457744-3|CAM36369.1|  247|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF099926-2|AAK73894.1|  247|Caenorhabditis elegans Hypothetical ...    29   3.8  
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z95559-17|CAL44975.1|  331|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.        28   6.7  
L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage stimul...    28   6.7  
AF098995-11|AAC67488.2|  415|Caenorhabditis elegans Hypothetical...    27   8.8  
AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical
           protein ZC404.13 protein.
          Length = 364

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 45  KLLMKNEADKAINYMTVYLEQISLYFQVIIH 75
           +LL++N +D   +Y+T Y + I  YFQ+  H
Sbjct: 95  QLLLRNFSDYYSSYITAYAQLIVDYFQIAFH 125


>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 29  RTQKSREDMDTLVSQIKLLMKNEADKAINYMTVYLEQISLYFQVIIHDRKPR---NGTYC 85
           R ++ R+D+++   Q++L      ++A N  +       L+ +  +  R  R        
Sbjct: 663 RAEEERKDLESKQEQLELKETKVPEEAENQQSSRELHEDLWARKELEKRFARAMLQNAEL 722

Query: 86  KESIVKLLGENLQLADENVTLC-LALGYQRVQRLP-EKLQVHFETLENLKKYSASKLFEC 143
            E+I +L   N QL  EN T+    + YQ  ++L  E+L+V  E L+ +++     +  C
Sbjct: 723 VETIDRLEHINQQLELENDTIADHVVLYQHQRKLVRERLRVKDEQLKAMEEDRTKTVARC 782

Query: 144 QKQQQV 149
           Q+ Q V
Sbjct: 783 QELQNV 788


>CU457744-3|CAM36369.1|  247|Caenorhabditis elegans Hypothetical
           protein T06A10.4 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 112 YQRVQR-LPEKLQVHFETLENLKKYSASKLFECQKQQQVGGNCSHESQDLERTVFLYETS 170
           + ++ R +PEK +     +E L    A K  E  K+ ++    ++E    E+    +   
Sbjct: 14  FSKINREVPEKAKKAIVEIERLD-ILAKKEMEVAKKHKIEFFANYEEMTAEQKTKAFTFM 72

Query: 171 PFPVV-MSEIAIHGFKEVSDLSVCLKDIISRMMTHSVKVIGDFNRCIHNIEMP 222
              +  +SE +    +  S L V LKD+  + M    K I + N+     E P
Sbjct: 73  QKKMAKVSEYSDQKIEIASGLKVLLKDVYGKFMEEEQKFIENLNKIPKAPETP 125


>AF099926-2|AAK73894.1|  247|Caenorhabditis elegans Hypothetical
           protein T06A10.4 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 112 YQRVQR-LPEKLQVHFETLENLKKYSASKLFECQKQQQVGGNCSHESQDLERTVFLYETS 170
           + ++ R +PEK +     +E L    A K  E  K+ ++    ++E    E+    +   
Sbjct: 14  FSKINREVPEKAKKAIVEIERLD-ILAKKEMEVAKKHKIEFFANYEEMTAEQKTKAFTFM 72

Query: 171 PFPVV-MSEIAIHGFKEVSDLSVCLKDIISRMMTHSVKVIGDFNRCIHNIEMP 222
              +  +SE +    +  S L V LKD+  + M    K I + N+     E P
Sbjct: 73  QKKMAKVSEYSDQKIEIASGLKVLLKDVYGKFMEEEQKFIENLNKIPKAPETP 125


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
            C46A5.4 protein.
          Length = 1432

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 105  TLCLALGYQRVQRLPEKLQVHFETLENLKKYSASKLFECQKQQQVGGNC--SHESQDLER 162
            TL   +G Q +QRL +  + ++ET +++ +++  +L E +K       C  S  + +++ 
Sbjct: 1274 TLACLIGEQ-MQRLKKCDRFYYETSDSMVRFTPDQLVEIRKASLSRIICDNSEYAANIQP 1332

Query: 163  TVFLY--ETSPFPVVMSEIAIHGFKEVSDLSVCLKD--IISRMMTHSV 206
             VFL   + +  P+  SE++     +  +   CL D  +++R  T  +
Sbjct: 1333 NVFLMPDDLTNSPMTCSELSEIDLNKWVERDYCLVDERVVNRGKTKRI 1380


>Z95559-17|CAL44975.1|  331|Caenorhabditis elegans Hypothetical
           protein Y41E3.19 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 62  YLEQISLYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENVTLCLALG 111
           YL + SLYF VII   K +     K+    LL  ++    + +TL L +G
Sbjct: 270 YLPKCSLYFAVIISSEKAKIRRVKKKFWPSLLLMDIPKLGDRITLVLDMG 319


>Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical
           protein F07C6.1 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 75  HDRKPRNG-TYCKESIVKLLGENLQLADENV 104
           H+   +NG  YC++  ++L+G +  + D NV
Sbjct: 240 HEHYEKNGKAYCRDDFLELIGHHCFICDRNV 270


>Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical
           protein F28C6.6 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/103 (22%), Positives = 41/103 (39%)

Query: 2   SLNQQNTTDFQDNLINGYRALIADIQVRTQKSREDMDTLVSQIKLLMKNEADKAINYMTV 61
           +LN+ N T      I     L AD  +R      D ++ V  +  ++K E  +   Y   
Sbjct: 444 NLNEDNNTRVVFERILTSSKLPADKSIRIWDRFLDFESCVGDLASILKVEKRRKTAYEEA 503

Query: 62  YLEQISLYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENV 104
             +Q   +  ++I   K  +   C    +KL+G N     E++
Sbjct: 504 QKDQTMNHSMLVIDRYKFMDLMPCSGEQLKLIGYNALKGTESI 546


>U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/103 (22%), Positives = 41/103 (39%)

Query: 2   SLNQQNTTDFQDNLINGYRALIADIQVRTQKSREDMDTLVSQIKLLMKNEADKAINYMTV 61
           +LN+ N T      I     L AD  +R      D ++ V  +  ++K E  +   Y   
Sbjct: 439 NLNEDNNTRVVFERILTSSKLPADKSIRIWDRFLDFESCVGDLASILKVEKRRKTAYEEA 498

Query: 62  YLEQISLYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENV 104
             +Q   +  ++I   K  +   C    +KL+G N     E++
Sbjct: 499 QKDQTMNHSMLVIDRYKFMDLMPCSGEQLKLIGYNALKGTESI 541


>L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage
           stimulation factor protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/103 (22%), Positives = 41/103 (39%)

Query: 2   SLNQQNTTDFQDNLINGYRALIADIQVRTQKSREDMDTLVSQIKLLMKNEADKAINYMTV 61
           +LN+ N T      I     L AD  +R      D ++ V  +  ++K E  +   Y   
Sbjct: 444 NLNEDNNTRVVFERILTSSKLPADKSIRIWDRFLDFESCVGDLASILKVEKRRKTAYEEA 503

Query: 62  YLEQISLYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENV 104
             +Q   +  ++I   K  +   C    +KL+G N     E++
Sbjct: 504 QKDQTMNHSMLVIDRYKFMDLMPCSGEQLKLIGYNALKGTESI 546


>AF098995-11|AAC67488.2|  415|Caenorhabditis elegans Hypothetical
           protein F58E1.11 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 10  DFQDNLINGYRALIADIQVRTQ--KSREDMD--TLVSQIKLLMKNEADKAINYMTVYLEQ 65
           D++ NLI   +  IA++    +  K R  +D  T++ Q+K L    +   I  +TV L  
Sbjct: 108 DYEQNLITREKRRIANLPNEEERVKPRAALDRRTMIHQMKSLRLISSITNIPPLTVGLNP 167

Query: 66  ISLYFQVIIHDRKPRNGTY 84
           I  +    IH  K  N  Y
Sbjct: 168 IEHHMSFSIHRTKSGNDGY 186


>AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical
           protein T06A1.4 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 86  KESIVKLLGENLQLADENVTLCLALGYQRVQRLPEKLQVHFETLENLKKYSASKLFECQK 145
           K+  +KL   N Q  D N   C   G++ +    + L+V  + +  +++        C +
Sbjct: 71  KDLYLKLKNVNAQTVDMN---CSDPGFEAIAA--QYLKVFDDVITAVEEKPGDVQTACDR 125

Query: 146 QQQVGGNCSHESQDLERTVFLYETSPFPVVMSEIAIHGFKEVSDL 190
            Q VG     +   ++ T+F     PF  ++S I    F E +++
Sbjct: 126 LQAVGKMHRQKVSGMDGTMFQNMEEPFIQMVSHILQDRFNEKAEM 170


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,292,982
Number of Sequences: 27539
Number of extensions: 205580
Number of successful extensions: 601
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 12
length of query: 235
length of database: 12,573,161
effective HSP length: 79
effective length of query: 156
effective length of database: 10,397,580
effective search space: 1622022480
effective search space used: 1622022480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)