GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001414-TA|BGIBMGA001414-PA|undefined
         (235 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   4.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   6.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.3  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 130 ENLKKYSASKLFECQKQQQVGGNCSHESQDLERTVFLYETS 170
           ++ K  S   +F C K  +     SHE Q+L     + E S
Sbjct: 296 DSAKSESQQTVFLCYKLMEKFPERSHEQQELYMAAQVIEKS 336


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 19  YRALIADIQVRTQKSREDMDTLVSQIKLLMK 49
           +RA +A ++ RT+  +  +D + S+ KL MK
Sbjct: 537 WRAFLAVLKRRTEIYKGLIDRIKSREKLTMK 567


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 154 SHESQDLERTVFLYETSPFPVVMSEIAIHGFKEVSDLSVCLKD 196
           +HE +  ++T FL    P P  +        +E+ DL V  ++
Sbjct: 295 THEIKLHDKTPFLKRPYPVPFALRPAVDATIQEMLDLGVIKRE 337


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,650
Number of Sequences: 317
Number of extensions: 1885
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 235
length of database: 114,650
effective HSP length: 55
effective length of query: 180
effective length of database: 97,215
effective search space: 17498700
effective search space used: 17498700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)