Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001414-TA|BGIBMGA001414-PA|undefined
(235 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 35 0.066
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 34 0.087
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 33 0.26
06_02_0098 + 11720417-11720806,11722151-11722348,11723088-117232... 31 0.81
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 31 0.81
11_04_0350 - 16658497-16659015 30 1.4
08_01_0652 + 5627226-5628395,5628885-5629040,5629115-5629304,562... 29 2.5
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996... 28 7.5
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 28 7.5
08_02_1536 + 27684789-27685517 27 9.9
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420 27 9.9
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 34.7 bits (76), Expect = 0.066
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 101 DENV-TLCLALGYQRVQRLPEKLQVH----FETLENLKKYSASKLFECQKQQQ 148
D NV +C+ LG+ +Q LPE LQ+H + LE ++KY +L C+ QQ
Sbjct: 1414 DTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRL--CKLDQQ 1464
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 34.3 bits (75), Expect = 0.087
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Query: 101 DENV-TLCLALGYQRVQRLPEKLQVH----FETLENLKKYSASKLFECQKQQQ 148
D NV +C+ LG+ +Q LPE LQ+H + LEN++KY +L C+ Q+
Sbjct: 1515 DTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLENIQKYLWPRL--CKLDQR 1565
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 101 DENVT-LCLALGYQRVQRLPEKLQVH----FETLENLKKYSASKLFECQKQQQV 149
D NV +C+ LG+ +Q LPE LQ+H + LE+++KY +L C+ Q +
Sbjct: 1308 DTNVARICVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRL--CKLDQLI 1359
>06_02_0098 +
11720417-11720806,11722151-11722348,11723088-11723210,
11723288-11723499,11723580-11723851,11723931-11724199,
11724976-11724990
Length = 492
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 106 LCLALGYQRVQRLPEKLQVHFETLENLKKYSASKLFECQKQQQVGGNCSHESQDLERTVF 165
+ L + Y ++ KLQ L + ++ C +++ +GGN + +D +
Sbjct: 363 IILRIVYDKIYDSARKLQAGSGALIWQLMVEGTHMYGCMEKETLGGNAQYHPKD---CCY 419
Query: 166 LYETSPFPVVMSEIAIHGFKEVSDLSVCLKDIIS 199
Y PF + A K+ D C+ +++S
Sbjct: 420 WYRKFPFYKTQTLFAASFEKQTMDREACIVNMLS 453
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 31.1 bits (67), Expect = 0.81
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 101 DENV-TLCLALGYQRVQRLPEKLQVHFETLENL--KKYSASKLFECQKQQQVGGNCSHES 157
D NV +C+ LG+ +Q LPE LQ+H L L + + K+F C K + C S
Sbjct: 1443 DTNVGRICVRLGWVPIQPLPESLQLHLLELYELHYQMITFGKVF-CTKSKPNCNACPMRS 1501
Query: 158 Q 158
+
Sbjct: 1502 E 1502
>11_04_0350 - 16658497-16659015
Length = 172
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/108 (19%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 77 RKPRNGTYCKESIVKLLGENLQLADENVT--LCLALGYQRVQRLPEKLQVHFETLENLKK 134
+K + Y +E I+ +G +L + T L ALG + + +LP L H +++ K+
Sbjct: 50 KKKKKVRYTQEQILYCIGNPEELPERRDTPKLTEALGAELLAKLPPDLVAHLRAMDDAKE 109
Query: 135 YSASK----LFECQKQQQVGGNCSHESQDLERTVFLYETSPFPVVMSE 178
++ + E + +++V N + +D+ + + + + V++ +
Sbjct: 110 EGKARRKALIEELRHEREVIYNIRDKPEDVLKQYYAKGYAEYEVIIDD 157
>08_01_0652 +
5627226-5628395,5628885-5629040,5629115-5629304,
5629590-5629729
Length = 551
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 93 LGENLQLADENVTLCLALGYQRVQRLPEKLQVHFETLENLKKYS--ASKLFECQKQQQVG 150
LGE A+ + + L +QRL KL+++F T + L+ + + F C+ Q V
Sbjct: 411 LGEWCMAAEFDTLIFLLQRSPNLQRLFLKLKLNFNTRKPLESGAKPMGRSFTCKDLQMVK 470
Query: 151 GNCSHESQDLERTVFLYETSPFPV 174
CS + + L+ + P+
Sbjct: 471 IRCSKDDVRVHTLACLFRANGIPI 494
>09_03_0003 +
11396076-11396386,11398803-11398869,11399194-11399698,
11400903-11401038,11401186-11401257,11401891-11401923,
11401924-11402047,11402387-11402437,11403437-11403563,
11404230-11404298,11404369-11404486,11404755-11405151
Length = 669
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 126 FETLENLKK-YSASKLFECQKQQQVGGN-CSHESQDLERTVFLYETSPFPVVMSEIAI 181
F L++L+ Y+ + F C + G+ C+ +SQ+ + TV L+ PV++ I +
Sbjct: 355 FSLLKSLQYFYNLQQYFRCFRYDTTNGDPCNGKSQEKKNTVVLFVAIFVPVLIVAILV 412
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 152 NCSHESQDLERTVFLYETSPFPVVMSEIAIHGFKEVSDLSVCLKDIISRMMTHSVKVIGD 211
NC H DLE Y+ PF VV A F DL ++ +TH V GD
Sbjct: 438 NCMHVLPDLEFIEKKYKDKPFTVVGVHSA--KFDNEKDLEAIRNAVLRYNITHPVVNDGD 495
>08_02_1536 + 27684789-27685517
Length = 242
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 153 CSHESQDLERTVFLYETSPFPVVMSEIAIHGFKEVSDLSVCLKDII 198
CS+E+ E+ L E P E +GF+ ++D+ C+ +I+
Sbjct: 15 CSNETNIEEQLASLREIICSPSATMETMCNGFRRLTDVYSCMDEIM 60
>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
Length = 1407
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 75 HDRKPRNGTYCKESIVKLLGENLQLADENVTLCLALGYQRVQRLPEKL 122
++ KPR T +I GE+++ A +NV CL L +R++ LP L
Sbjct: 817 NELKPRMATLALFTITNRFGESVRGAWKNVVDCL-LKLKRLKLLPPSL 863
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,677,719
Number of Sequences: 37544
Number of extensions: 204701
Number of successful extensions: 458
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 11
length of query: 235
length of database: 14,793,348
effective HSP length: 80
effective length of query: 155
effective length of database: 11,789,828
effective search space: 1827423340
effective search space used: 1827423340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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