Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001414-TA|BGIBMGA001414-PA|undefined
(235 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 33 0.20
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 33 0.27
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 31 1.1
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 1.1
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0) 30 1.9
SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4) 29 2.5
SB_21777| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-06) 29 4.4
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 28 5.8
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 188 SDLSVCLKDIISRMMTHSVKVI--GDFNRCIHNIEMP 222
S+ VC I++RM +H +K + GDF RC+H++ P
Sbjct: 25 SEYVVCCMRIMTRMGSHVLKALGDGDFVRCLHSVGGP 61
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 188 SDLSVCLKDIISRMMTHSVKVI--GDFNRCIHNIEMP 222
S+ VC I++RM +H +K + GDF +C+H++ P
Sbjct: 339 SEYVVCCMRIMTRMGSHVLKALDQGDFVKCLHSVGKP 375
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 30.7 bits (66), Expect = 1.1
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 60 TVYLEQISLYFQVIIHDRKPRNGT--YCKESIVKLLGENLQLADENVTLCLALGYQ---- 113
T YLE I+LY ++ RK G K + KLL N L D +AL Q
Sbjct: 1098 TSYLELITLYLSMLDEKRKQLIGARDRVKNGLKKLLETN-DLVDTMQVELVALEPQLKQK 1156
Query: 114 --RVQRLPEKLQVHFETLENLKK-YSASKLFECQKQQQVGGNCSHESQDLERTV 164
V++L EKLQV E + ++ A + +K + + +DL+ +
Sbjct: 1157 SLDVEKLMEKLQVDQEEADKVRNVVQAEEAVAKEKADETSAIAAEAQKDLDEAL 1210
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 162 RTVFLYETSPFPVVMSEIAIHGFKEV-SDLSVCLKDIISRMMTHSVKVI--GDFNRCIHN 218
RT+++ S PV S I+ G + S+ VC I++RM +H +K + GDF R +H+
Sbjct: 129 RTMYVLPFSMGPVG-SPISKIGIQLTDSEYVVCCMRIMTRMGSHVLKALGDGDFVRGVHS 187
Query: 219 IEMP 222
+ P
Sbjct: 188 VGFP 191
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 110 LGYQRVQRLPEKLQVHFETLENLKKYSASKLFECQKQQQVGGNCSHESQDLERTVFLYET 169
LG Q K Q E L NLKK K E K ++VGGN E +D V + T
Sbjct: 505 LGAHVAQHQKPKSQQWRERL-NLKKEEIPKKTEDTKSEEVGGNDEPEEEDAH--VVKHPT 561
Query: 170 SPF 172
PF
Sbjct: 562 MPF 564
>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 909
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 39 TLVSQIKLLMKNE----ADKAINYMTVYLEQISLYFQVIIHDRKPRNGTYCKESIVKLLG 94
T S++ LL++ + +D+ + V+L LYF+ +I K GT+ KE+++ ++
Sbjct: 16 TFYSKMALLIRIDDTVISDEEVKIRVVFLSAYYLYFRAVIVRCKQICGTFRKEAVMSIME 75
Query: 95 EN 96
N
Sbjct: 76 YN 77
>SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)
Length = 1145
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 5 QQNTTDFQDNLINGYRALIADIQVRTQKSR 34
Q NT ++D LI+G R+ I D+Q R SR
Sbjct: 185 QYNTKQYED-LIDGIRSTITDLQTRLNNSR 213
>SB_21777| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-06)
Length = 341
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 37 MDTLVSQIKLLMKNEADKAINYMTVYLEQISLYFQVIIHDRKPRNGTYCKESIVKLLGEN 96
+D + Q +L K + +KA+ +E+ ++ Q+ NG CKE I + G
Sbjct: 246 LDEMSPQKELEKKRDENKALKKGEKAIEKCTID-QIQQDSGTAFNG--CKEEI-QSNGLK 301
Query: 97 LQLADENVTLCLALGYQRVQRLPEKLQVHFETLENLKKYS 136
Q EN TL L L Q + R + F+T ++ K++
Sbjct: 302 YQTNSENTTLKLTLRLQTIPRKGKDKPSSFKTQNSVPKFT 341
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 23 IADIQVRTQKSREDMDTLVSQIKLLMKNEADKAINYMTVYLEQISLYFQVIIHDRKPR 80
I D++ + K R+D +IK+L++ +A++ VYL QIS + + K R
Sbjct: 36 IVDLKEKNNKMRDDFTQERMEIKVLLEKQANEITQ---VYLSQISKLQSQLAEEVKKR 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.134 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,899,948
Number of Sequences: 59808
Number of extensions: 248328
Number of successful extensions: 763
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 10
length of query: 235
length of database: 16,821,457
effective HSP length: 80
effective length of query: 155
effective length of database: 12,036,817
effective search space: 1865706635
effective search space used: 1865706635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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