GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001414-TA|BGIBMGA001414-PA|undefined
         (235 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   7.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.4  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 92  LLGENLQLADENVTLCLALGYQRVQRLPEKLQ 123
           + GEN +L  E V   L  G + +  + EKL+
Sbjct: 100 IFGENDELIAEKVAHALESGLKVIACIGEKLE 131


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
          protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 4  NQQNTTDFQDNLINGY 19
          N  N ++  DNL+ GY
Sbjct: 2  NHSNISELLDNLLRGY 17


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,317
Number of Sequences: 429
Number of extensions: 2487
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 235
length of database: 140,377
effective HSP length: 56
effective length of query: 179
effective length of database: 116,353
effective search space: 20827187
effective search space used: 20827187
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)