GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001414-TA|BGIBMGA001414-PA|undefined
         (235 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64870.1 68414.m07354 hypothetical protein                          34   0.072
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ...    31   0.89 
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    29   3.6  
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ...    28   4.8  
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family...    28   4.8  
At5g44180.1 68418.m05406 homeobox transcription factor, putative...    28   6.3  
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse...    28   6.3  
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse...    28   6.3  

>At1g64870.1 68414.m07354 hypothetical protein
          Length = 304

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 150 GGNCSHESQDLERTVFLYETSPFPVVMSEIAIHGFKEV 187
           G N +H + D ERTVFL  +  FPV  +E+ IH F E+
Sbjct: 191 GWNANHVATDKERTVFLTFSRGFPVSHAEV-IHLFTEI 227


>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
           SP|Q42510 Pattern formation protein EMB30 (GNOM)
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1375

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 75  HDRKPRNGTYCKESIVKLLGENLQLADENVTLCLALGYQRVQRLPEKLQVHFETLE 130
           HD KPR  T    ++    G++++    N+  CL L  +++Q LP+ + + FE  E
Sbjct: 796 HDMKPRMATLAVFTLANTFGDSIRGGWRNIVDCL-LKLRKLQLLPQSV-IEFEINE 849


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
            protein (ROS1) similar to DEMETER protein [Arabidopsis
            thaliana] GI:21743571; contains Pfam profile PF00730:
            HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 7/53 (13%)

Query: 101  DENV-TLCLALGYQRVQRLPEKLQVH----FETLENLKKYSASKLFECQKQQQ 148
            D NV  + + LG+  +Q LPE LQ+H    +  LE+++KY   +L  C+  Q+
Sbjct: 971  DTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRL--CKLDQK 1021


>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
           contains Pfam:PF00320 GATA zinc finger domain
          Length = 470

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/88 (21%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 30  TQKSREDMDTLVSQIKLLMKNEADKAINYMTVYLEQISLYFQVIIHDRKPRNGTYCKESI 89
           T++ ++ +  L+ Q+  + + ++ +++   + + E +SL+ Q++       N +Y K   
Sbjct: 273 TEEEQQKLMKLLPQVDSVDRPDSLRSMFESSQFKENLSLFQQLVADGVFETNSSYAKLED 332

Query: 90  VKLLGENLQLADENVTLCLALGYQRVQR 117
           +K L + L L+D N +  L   Y   +R
Sbjct: 333 IKTLAK-LALSDPNKSHLLESYYMLKRR 359


>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
           protein
          Length = 571

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 158 QDLERTVFLYETSPFPVVMSEIAIHGFKEVSDLSVCLKDIISRMMTHSVKVIGDFNRCIH 217
           Q + R V   E     ++     I   KEV +  + L++I+   M+      GD   CI+
Sbjct: 487 QSIRRWVITKEELVHKIIAGHSDITDRKEVEEQLILLQEIVPEWMSEKKSSSGDVLVCIN 546

Query: 218 NIEMP 222
            +  P
Sbjct: 547 KLASP 551


>At5g44180.1 68418.m05406 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7/homeotic
           protein Hox7 (GI:19486)   {Lycopersicon peruvianum};
           similar to GP|4165087| Williams-Beuren syndrome deletion
           transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
           domain and Pfam  PF00046: Homeobox domain
          Length = 1694

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 31  QKSREDMDTLVSQIKLLMKNEADKAINYMTVYLEQISLYFQVIIHDRKPRNGTYCKESIV 90
           +K RE+   L  Q++ L + E  K +   T+  E++    ++       R     + +I 
Sbjct: 385 EKQREEERYLKEQMRELQRRE--KFLKKETIRAEKMRQKEEMRKEKEVARLKAANERAIA 442

Query: 91  -KLLGENLQLA-DENVTLCLALGYQRVQRLPEKLQVHFETLENLKKY 135
            K+  E+++L  DE + L       +   LP  L + FETL+NL +Y
Sbjct: 443 RKIAKESMELIEDERLELMEVAALTK--GLPSMLALDFETLQNLDEY 487


>At3g19400.2 68416.m02460 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 290

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 68  LYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADEN 103
           +Y Q ++ +RK  NG   KE   K+  +NL+  DE+
Sbjct: 43  MYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEH 78


>At3g19400.1 68416.m02461 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 362

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 68  LYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADEN 103
           +Y Q ++ +RK  NG   KE   K+  +NL+  DE+
Sbjct: 43  MYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEH 78


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,909,201
Number of Sequences: 28952
Number of extensions: 186456
Number of successful extensions: 516
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 8
length of query: 235
length of database: 12,070,560
effective HSP length: 79
effective length of query: 156
effective length of database: 9,783,352
effective search space: 1526202912
effective search space used: 1526202912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)