Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001412-TA|BGIBMGA001412-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (100 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   0.95 
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    24   5.1  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   8.9  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 33  YSILLVIGAVGNVAVLISLLRNRRRKSRVSLL--MTHLVIADMIV 75
           YS++L +   G    + SL+R+   K +  LL   THL + ++++
Sbjct: 950 YSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFTHLAVDNILI 994


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 45  VAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIPLEAWSKTRLDIAGRTKLDF 100
           V V +SL+R   + S  +L+    ++  ++ ++++  +   +K   D+A   K DF
Sbjct: 402 VFVPLSLVRKISKLSATALIADVFILLGILYLYFWDVITLATKGIADVAMFNKTDF 457


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 40  GAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIPL 82
           G V   +++IS +        VSLL+  + + D I I   +PL
Sbjct: 433 GLVNYSSLIISEINENFSSVTVSLLVAPIWVFDAIAILTVLPL 475


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.329    0.142    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,353
Number of Sequences: 5004
Number of extensions: 8455
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 2,362,478
effective HSP length: 63
effective length of query: 37
effective length of database: 2,047,226
effective search space: 75747362
effective search space used: 75747362
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 47 (23.0 bits)