Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001412-TA|BGIBMGA001412-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (100 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0638 + 12493520-12494053                                         27   3.3  
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301...    26   5.8  
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534...    26   5.8  
06_03_0596 + 22608835-22610263,22610411-22610531,22610765-226118...    25   7.7  

>02_02_0638 + 12493520-12494053
          Length = 177

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 26  QNFVIGVYS-ILLVIGAVGNVAVLISLLRNRRRKSRVS 62
           Q  + G+ S I+ VIG +G + + +++ RNR R  RVS
Sbjct: 111 QYIIEGLSSGIMFVIGGIGIILLDLAVDRNRPRSLRVS 148


>07_03_0968 -
           23027940-23028149,23028800-23029002,23029610-23030138,
           23030342-23030579,23031121-23031168,23031199-23031494
          Length = 507

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 26  QNFVIGVYSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIPLE 83
           +N  +G+ S    IG++ +  V +SL  N R+K  V  +   L +A   V    IPLE
Sbjct: 445 RNTGVGITSSFGRIGSIVSPVVTVSLSENCRQKEAVFFMDLMLFLA--AVACALIPLE 500


>03_02_0061 +
           5342338-5342401,5343025-5343131,5343962-5344009,
           5344297-5344399,5345152-5345234,5345271-5346089,
           5346189-5346338,5346420-5346797
          Length = 583

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 42  VGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIF 77
           +GN+ V+ +  R  R  + VSL  T  V+A ++V+F
Sbjct: 89  IGNLEVMRTAYRLLRLVTAVSLPQTRRVMAKLLVLF 124


>06_03_0596 +
           22608835-22610263,22610411-22610531,22610765-22611864,
           22611969-22612327
          Length = 1002

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 49  ISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIPLEAWSK 87
           + + RNRR KS V +LM  + I  + +I        W K
Sbjct: 628 VQVHRNRRHKSLVLVLMIVIPIVSITIILLSFAAFFWRK 666


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.329    0.142    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,450
Number of Sequences: 37544
Number of extensions: 50451
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 4
length of query: 100
length of database: 14,793,348
effective HSP length: 71
effective length of query: 29
effective length of database: 12,127,724
effective search space: 351703996
effective search space used: 351703996
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 53 (25.4 bits)