Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001412-TA|BGIBMGA001412-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (100 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       57   5e-11
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    37   4e-05
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    36   1e-04
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    33   7e-04
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    32   0.001
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    32   0.002
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    32   0.002
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    31   0.002
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    29   0.011
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    29   0.014
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    26   0.10 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   0.41 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   2.2  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 56.8 bits (131), Expect = 5e-11
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 33  YSILLVIGAVGNVAVLISLL-RNRRRKSRVSLLMTHLVIADMIVIFYFIPLE-AWSKT 88
           YS+L++I A+GN  VLI +  R R  KSR+ +++ HL IAD++V F  +PLE  W+ T
Sbjct: 44  YSVLMIISAIGNTTVLILITCRKRVSKSRIHIMLMHLAIADLLVTFLMMPLEIGWAIT 101


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 37.1 bits (82), Expect = 4e-05
 Identities = 13/54 (24%), Positives = 32/54 (59%)

Query: 32  VYSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIPLEAW 85
           +Y+++ V G VGNV+  + + RN+   +  +  +  L ++D++++   +P E +
Sbjct: 59  IYAVIFVTGLVGNVSTCVVIARNKSMHTATNYYLFSLAVSDLLLLISGLPPEIY 112


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
          protein.
          Length = 405

 Score = 35.5 bits (78), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 32/51 (62%)

Query: 31 GVYSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIP 81
          G++++L+++  VGN  V+ +++  RR +S  +  ++ L  AD++V    +P
Sbjct: 42 GLFTMLIIVTIVGNTLVIAAVITTRRLRSVTNCFVSSLAAADLLVGLAVMP 92


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
          protein.
          Length = 459

 Score = 33.1 bits (72), Expect = 7e-04
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 33 YSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIPLE 83
          Y ++ V G VGN+   I + RN   ++  +  + +L ++D++ +   +P E
Sbjct: 40 YVVIFVTGFVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFLILGLPFE 90


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like
          GPCR protein.
          Length = 381

 Score = 32.3 bits (70), Expect = 0.001
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 32 VYSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIPLE 83
          +Y I+ V G  GN+     +++N   ++  +  +  L I+D+I++   +P E
Sbjct: 46 IYMIIFVTGIFGNITTCTVIIKNPAMQTATNYYLFSLAISDLILLVLGLPNE 97


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 31.9 bits (69), Expect = 0.002
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 24  PEQNFVIG---VYSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIF 77
           P ++F IG   +YS+LL++  VGN  V+     ++  ++  ++ +  L I D+I+ F
Sbjct: 52  PGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAF 108


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 31.9 bits (69), Expect = 0.002
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 24  PEQNFVIG---VYSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIF 77
           P ++F IG   +YS+LL++  VGN  V+     ++  ++  ++ +  L I D+I+ F
Sbjct: 52  PGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAF 108


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 31.5 bits (68), Expect = 0.002
 Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 32  VYSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIPLEA-WSKTRL 90
           V +I+ V+  +GNV V++++    + ++  ++ +  L +AD++V    +P  A W   ++
Sbjct: 71  VLAIVNVMVVLGNVLVILAVYHTSKLRNVTNMFIVSLAVADLMVGLAVLPFSATWEVFKV 130

Query: 91  DIAG 94
            I G
Sbjct: 131 WIFG 134


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 29.1 bits (62), Expect = 0.011
 Identities = 11/43 (25%), Positives = 25/43 (58%)

Query: 43  GNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIPLEAW 85
           GNV V+++++R R  ++  +  +  L +AD++V    +P   +
Sbjct: 203 GNVLVILAVVRERALQTVTNYFIVSLAVADLLVAVLVMPFAVY 245


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
          protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 0.014
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 32 VYSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIV 75
          ++ IL+ +   GN+ V +++  +R  +   +L +  L IAD+ V
Sbjct: 31 LFLILIFLSVAGNILVCVAIYTDRGLRRIGNLFLASLAIADLFV 74


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 152

 Score = 25.8 bits (54), Expect = 0.10
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 28 FVIGVYSILLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIP 81
          FVIG+   + V+G   N  V+   L  +  ++  +L + +L I+D +++F   P
Sbjct: 23 FVIGMLGFVSVMG---NGMVVYIFLSTKSLRTPSNLFVINLAISDFLMMFCMSP 73


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
          receptor protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 0.41
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 36 LLVIGAVGNVAVLISLLRNRRRKSRVSLLMTHLVIADMIVIFYFIP 81
          L++   +GN  V++S+   R  +   +  +  L +AD+ V    +P
Sbjct: 46 LVLATVLGNALVILSVFTYRPLRIVQNFFIVSLAVADLAVAILVMP 91


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 33  YSILLVIGAVGNVAVL 48
           Y ++ +IGA GN A+L
Sbjct: 290 YGVMSMIGAFGNKALL 305


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.142    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,121
Number of Sequences: 429
Number of extensions: 562
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 100
length of database: 140,377
effective HSP length: 49
effective length of query: 51
effective length of database: 119,356
effective search space:  6087156
effective search space used:  6087156
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.9 bits)
S2: 38 (19.4 bits)