Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001411-TA|BGIBMGA001411-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
(353 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 40 5e-04
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 39 0.001
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 38 0.002
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 38 0.002
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 37 0.004
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 36 0.011
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 30 0.57
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 29 0.75
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 5.3
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 27 5.3
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 9.3
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 9.3
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 26 9.3
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 26 9.3
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 9.3
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 39.9 bits (89), Expect = 5e-04
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L+I F YPF+PP V I + G+IC+++L Q WS A T+ V++ I +
Sbjct: 52 LSIHFPTDYPFKPPKVNFTTRIYHPN-INSNGSICLDILRDQ-WSPALTISKVLLSICSL 109
Query: 304 L 304
L
Sbjct: 110 L 110
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLT-KQGWSSAYTVEAVIMQI 300
L + F E YP PP R P+ V G +C+ +L ++GW A T++ +++ I
Sbjct: 60 LTMAFPEEYPTRPPKCRFTPPLFHPN-VYPSGTVCLSILNEEEGWKPAITIKQILLGI 116
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L + F E YP +PP V+ V + V G +C+++L + WS Y V A++ I +
Sbjct: 55 LVLSFDEQYPNKPPLVKFVSTMFHPN-VYANGELCLDILQNR-WSPTYDVAAILTSIQSL 112
Query: 304 L 304
L
Sbjct: 113 L 113
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
+++ F YP+ PP + P+ V + G IC+++L K WS+ Y V+ +++ + +
Sbjct: 80 ISMSFPANYPYSPPTIIFTSPMWHPN-VDMSGNICLDIL-KDKWSAVYNVQTILLSLQSL 137
Query: 304 L 304
L
Sbjct: 138 L 138
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 243 LLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAA 302
+L+I E YP PP V I+ G +CM++L K WS A+++++ + I +
Sbjct: 55 VLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDIL-KTHWSPAWSLQSACLAIIS 113
Query: 303 TL 304
L
Sbjct: 114 LL 115
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 35.5 bits (78), Expect = 0.011
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 252 YPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATL 304
YPF PP + I GAIC+++L Q WS YT+++ ++ + + L
Sbjct: 63 YPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQ-WSPVYTMKSALISLQSLL 114
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 29.9 bits (64), Expect = 0.57
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 246 IIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMEL--LTKQGWSSAYTVEAVIMQIAA 302
+IF YPF+PP +R++ P G +C+ + W+ ++ V +++ + +
Sbjct: 58 LIFPPDYPFKPPAIRMITP---SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVS 113
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 0.75
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 278 CMELLTKQGWSSAYTVEAVIMQIAATLVKGKARIQFSATKVVSQTQYSLARAQQSFKCLV 337
CME+ GW AY+ + + A + K + AT S + ++ + ++ +
Sbjct: 673 CMEITNSSGWKIAYSGDTRPSEDFANIAKDSTLLIHEATLEDSMHEIAIKKQHSTYSEAL 732
Query: 338 QIHEKNG 344
++ +K G
Sbjct: 733 EVAKKAG 739
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 18 KKYEIHANITETYPTTPPVWFAESEDPIVTNAVQILTN--TQGRDNHVINQVGILLRELC 75
K Y I E+ T+P + + ++T V LTN +Q + H+ Q+ ++ LC
Sbjct: 562 KAYSCLETIIESLKTSPNIIETIISEDLITTIVNALTNSTSQNKSMHLQVQLLHIISSLC 621
Query: 76 K 76
+
Sbjct: 622 Q 622
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 157 LERLRQNQRQDYLSGSVSGSLQATDRLMKELRDIY 191
L LR NQ QD+ + S SL + L + +RD++
Sbjct: 452 LRDLRHNQSQDFETVSQDTSLTSVTVLPRTIRDVF 486
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 135 LEMVEDAGRSNKDDMETEHLATLERL 160
+E + + R+ KD ME+E L TLE++
Sbjct: 467 IECDDPSARAVKDRMESEQLETLEKI 492
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 134 PLEMVEDAGRSNKDDMETEHL-ATLERLRQN 163
P + E AG +NKD +ET HL T+ L N
Sbjct: 12 PPDEEESAGLTNKDIVETNHLYPTITNLSLN 42
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 173 VSGSLQATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHN 228
V+ SL+ + ++ + D+YR+ YS L ++ NI + SP H+
Sbjct: 726 VNSSLEYCENMLLDDYDVYRTKLLHKAGYSHTLAVPGKHKQNISMAETFSPSPRHD 781
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 284 KQGWSSAYTVEAVIMQIAATLVKGKARIQFSATKVVSQTQYSLARAQQSFKCLVQIHEKN 343
KQ SS + A + Q+ A++ + VV Q SLA +FK +++I +N
Sbjct: 89 KQSLSSLNSDIASLQQVVKGNRNKPAQMNQHSENVVVSLQNSLANTSMTFKDILEIRTQN 148
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 9.3
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 238 GKDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVI 297
G + LL IFK+ + P R P++ G +VG A T G ++A+ + +I
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMA-----RTGSGKTAAFVI-PMI 128
Query: 298 MQIAATLVKGKAR 310
+ +TL R
Sbjct: 129 EHLKSTLANSNTR 141
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,490,834
Number of Sequences: 5004
Number of extensions: 55782
Number of successful extensions: 131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 17
length of query: 353
length of database: 2,362,478
effective HSP length: 73
effective length of query: 280
effective length of database: 1,997,186
effective search space: 559212080
effective search space used: 559212080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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