Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001411-TA|BGIBMGA001411-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1150 + 34910941-34911010,34911611-34911738,34912025-349121... 46 6e-05
04_04_1516 - 34122205-34122348,34122430-34122534,34122878-341230... 44 1e-04
06_03_0198 - 17797574-17797717,17797995-17798099,17798509-177986... 42 6e-04
02_02_0339 + 9115297-9115366,9116280-9116407,9117537-9117641,911... 42 6e-04
02_01_0154 + 1078561-1078630,1078758-1078885,1079016-1079120,107... 42 7e-04
01_01_1187 + 9444742-9445317 42 7e-04
03_06_0260 - 32717142-32717270,32717743-32717831,32717950-327180... 42 0.001
09_02_0285 + 6894899-6895114,6896197-6896422,6896889-6896992,689... 41 0.001
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 41 0.001
01_07_0028 - 40588611-40588718,40588812-40588901,40589966-405901... 40 0.003
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 40 0.003
12_02_1249 - 27331801-27331896,27331984-27332072,27334020-273340... 40 0.004
01_05_0633 + 23840427-23840562,23840699-23840768,23840846-238409... 38 0.009
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960 34 0.15
05_01_0515 + 4343067-4344206,4344293-4344478,4344884-4345018,434... 34 0.20
01_06_1289 - 36010924-36011001,36011441-36011518,36012321-360124... 32 0.80
05_05_0110 + 22470869-22470920,22471044-22471146,22473261-224733... 31 1.4
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87... 31 1.4
04_04_0463 - 25397837-25399693,25402136-25402405 30 3.2
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 7.4
10_03_0033 - 7248131-7248711,7248947-7249079,7249470-7249994,725... 29 7.4
>01_06_1150 +
34910941-34911010,34911611-34911738,34912025-34912129,
34912525-34912668
Length = 148
Score = 45.6 bits (103), Expect = 6e-05
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R++KEL+D+ + S + ++ W + PDSP
Sbjct: 2 ASKRILKELKDLQKDPP---TSCSAGPAGEDMFHWQATIMG-PPDSPYAGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+NI F YPF+PP V + + G+IC+++L K+ WS A T+ V++
Sbjct: 50 ---FLVNIHFPPDYPFKPPKVSFKTKVFHPN-INSNGSICLDIL-KEQWSPALTISKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>04_04_1516 -
34122205-34122348,34122430-34122534,34122878-34123005,
34124003-34124072
Length = 148
Score = 44.4 bits (100), Expect = 1e-04
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R++KEL+D+ + S V + ++ W + DSP
Sbjct: 2 ASKRILKELKDLQKDPP---TSCSAGPVGEDMFHWQATIMGPS-DSPFAGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVE 294
L+NI F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+
Sbjct: 50 ---FLVNIHFPPDYPFKPPKVSFRTKVFHPNINS-----NGSICLDIL-KEQWSPALTIS 100
Query: 295 AVIMQIAATL 304
V++ I + L
Sbjct: 101 KVLLSICSLL 110
>06_03_0198 -
17797574-17797717,17797995-17798099,17798509-17798636,
17799444-17799513
Length = 148
Score = 42.3 bits (95), Expect = 6e-04
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R++KEL+D+ + S V + ++ W + DSP
Sbjct: 2 ASKRILKELKDLQKDPP---TSCSAGPVGEDMFHWQATIMG-PADSPYAGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L++I F YPF+PP V + + G+IC+++L K+ WS A TV V++
Sbjct: 50 ---FLVSIHFPPDYPFKPPKVAFKTKVFHPN-INSNGSICLDIL-KEQWSPALTVSKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>02_02_0339 +
9115297-9115366,9116280-9116407,9117537-9117641,
9118165-9118259,9119472-9119538,9119685-9119720
Length = 166
Score = 42.3 bits (95), Expect = 6e-04
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R++KEL+D+ + S V + ++ W L DSP
Sbjct: 2 ASKRILKELKDLQKDPP---TSCSAGPVAEDMFHWQATLMGPS-DSPYAGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+ I F YPF+PP V + + + G+IC+++L K+ WS A T+ V++
Sbjct: 50 ---FLVTIHFPPDYPFKPPKVALKTKVFHPN-INSNGSICLDIL-KEQWSPALTISKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>02_01_0154 +
1078561-1078630,1078758-1078885,1079016-1079120,
1079228-1079371
Length = 148
Score = 41.9 bits (94), Expect = 7e-04
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A R++KEL+D+ R S V+D ++ W + + DSP
Sbjct: 2 ALRRIIKELKDLQRDPP---TSCSAGPVSDDMFHWQATIMGPN-DSPYSGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+ I F YPF+PP V + + G IC+++L K WS A T+ V++
Sbjct: 50 ---FLVTIHFPPDYPFKPPKVAFKTKVFHPN-INSNGNICLDIL-KDQWSPALTISKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>01_01_1187 + 9444742-9445317
Length = 191
Score = 41.9 bits (94), Expect = 7e-04
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 241 SILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQI 300
S L++ F YP++PP VR P V G IC+++L + WSSAY V +++ I
Sbjct: 95 SYRLSLAFPGEYPYKPPKVRFETPCFHPN-VDAHGNICLDIL-QDKWSSAYDVRTILLSI 152
Query: 301 AATL 304
+ L
Sbjct: 153 QSLL 156
>03_06_0260 -
32717142-32717270,32717743-32717831,32717950-32718039,
32721571-32721596,32721772-32721896
Length = 152
Score = 41.5 bits (93), Expect = 0.001
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L + F E YP +PP VR V + + G+IC+++L Q WS Y V A++ I +
Sbjct: 55 LTLQFTEDYPNKPPVVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 112
Query: 304 L 304
L
Sbjct: 113 L 113
>09_02_0285 +
6894899-6895114,6896197-6896422,6896889-6896992,
6897121-6897239,6897445-6897634
Length = 284
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
+NI F YPF+PP V + + G+IC+++L K+ WS A T+ V++ I++
Sbjct: 52 VNIHFPPDYPFKPPKVNFQTKVYHPN-INSNGSICLDIL-KEQWSPALTISKVLLSISSL 109
Query: 304 L 304
L
Sbjct: 110 L 110
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L + F E YP +PP VR V + + G+IC+++L Q WS Y V A++ I +
Sbjct: 79 LTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 136
Query: 304 L 304
L
Sbjct: 137 L 137
>01_07_0028 -
40588611-40588718,40588812-40588901,40589966-40590125,
40590547-40590595,40591158-40591338
Length = 195
Score = 39.9 bits (89), Expect = 0.003
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 241 SILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQI 300
+ +++I YPFEPP ++ + + GAIC+++L K WS A T++ ++ +
Sbjct: 52 TFVIDIRLPGGYPFEPPKMQFITKVWHPNISSQNGAICLDIL-KDQWSPALTLKTALLSL 110
Query: 301 AATL 304
A L
Sbjct: 111 QALL 114
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 39.9 bits (89), Expect = 0.003
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 25/130 (19%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R+ KEL+D+ + S V + ++ W + DSP
Sbjct: 226 ASKRIQKELKDLQKDPP---TSCSAGPVGEDMFHWQATIMGPS-DSPYAGGV-------- 273
Query: 239 KDSILLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVE 294
L+ I F YPF+PP V +V +P I+ G+IC+++L K WS A T+
Sbjct: 274 ---FLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KDQWSPALTIS 324
Query: 295 AVIMQIAATL 304
V++ I + L
Sbjct: 325 KVLLSICSLL 334
>12_02_1249 -
27331801-27331896,27331984-27332072,27334020-27334083,
27334208-27334336,27334554-27334607,27334712-27334741
Length = 153
Score = 39.5 bits (88), Expect = 0.004
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L + F E YP E P V + P ++ G IC+++L WS A TV +V + I +
Sbjct: 57 LQVDFPEHYPMEAPQVIFLNPAPMHPHIYSNGHICLDIL-YDSWSPAMTVSSVCISILSM 115
Query: 304 LVKGKAR 310
L A+
Sbjct: 116 LSSSPAK 122
>01_05_0633 +
23840427-23840562,23840699-23840768,23840846-23840951,
23841086-23841184,23841320-23841442,23841555-23842691
Length = 556
Score = 38.3 bits (85), Expect = 0.009
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLT---KQGWSSAYTVEA 295
K +L I E YPF+PP V V PI + GG IC+++L K W + +
Sbjct: 57 KGVFVLKIQIPERYPFQPPNVTFVTPIYHPN-IDNGGRICLDILNLPPKGAWQPSLNIAT 115
Query: 296 VIMQIAATL 304
V+ I L
Sbjct: 116 VLTSIGLLL 124
>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
Length = 127
Score = 34.3 bits (75), Expect = 0.15
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 269 GYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATL 304
GYV G+IC+++L Q WS Y V A++ I + L
Sbjct: 54 GYVYADGSICLDILQNQ-WSPIYDVAAILTSIQSLL 88
>05_01_0515 +
4343067-4344206,4344293-4344478,4344884-4345018,
4346652-4346753,4346973-4347068,4347146-4347238,
4347351-4347470,4347580-4347612,4347699-4347749,
4347874-4347952,4348398-4348456
Length = 697
Score = 33.9 bits (74), Expect = 0.20
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 148 DMETEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIELVN 207
+ E + L L L+ + G S L+ D L+ E RD+ + + K N+ +
Sbjct: 78 EREDDPLIQLRSLKDRFKGRLKEGVASARLKCLDTLLNESRDLSQGNESKGNLLKSLIQK 137
Query: 208 DSLYEWNIRLRSVDPDS 224
L W ++ DP S
Sbjct: 138 AELDLWQVKELETDPTS 154
>01_06_1289 -
36010924-36011001,36011441-36011518,36012321-36012421,
36012506-36012603,36016213-36016315,36016435-36016486
Length = 169
Score = 31.9 bits (69), Expect = 0.80
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 29/140 (20%)
Query: 178 QATDRLMKELRDIYRSHSFKNNMYSIELVNDS-LYEWNIRLRSVDPDSPLHNDXXXXXXX 236
QA+ L K+L+D+ + H +S LV+DS ++EW + + + P L++
Sbjct: 7 QASLLLQKQLKDLAK-HPVDG--FSAGLVDDSNVFEWQVTI--IGPPDTLYDG------- 54
Query: 237 XGKDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQG---------- 286
G + +++ F + YP PP VR + V G +C+ +L G
Sbjct: 55 -GYFNAIMS--FPQNYPNSPPTVRFTSEMWHPN-VYPDGRVCISILHPPGDDPNGYELAS 110
Query: 287 --WSSAYTVEAVIMQIAATL 304
W+ +TVE++++ I + L
Sbjct: 111 ERWTPVHTVESIVLSIISML 130
>05_05_0110 +
22470869-22470920,22471044-22471146,22473261-22473358,
22473430-22473530,22474052-22474129,22474578-22474655
Length = 169
Score = 31.1 bits (67), Expect = 1.4
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 29/140 (20%)
Query: 178 QATDRLMKELRDIYRSHSFKNNMYSIELVNDS-LYEWNIRLRSVDPDSPLHNDXXXXXXX 236
QA+ L K+L+D+ ++ + +S LV+DS ++EW + + + P L++
Sbjct: 7 QASLLLQKQLKDLAKNPV---DGFSAGLVDDSNVFEWQVTI--IGPPDTLYDG------- 54
Query: 237 XGKDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQG---------- 286
G + ++ F + YP PP VR + V G +C+ +L G
Sbjct: 55 -GYFNAIMT--FPQNYPNSPPSVRFTSEMWHPN-VYPDGRVCISILHPPGEDPNGYELAS 110
Query: 287 --WSSAYTVEAVIMQIAATL 304
W+ +TVE++++ I + L
Sbjct: 111 ERWTPVHTVESIVLSIISML 130
>05_01_0128 +
866817-866859,867789-867874,868142-868231,868337-870214,
870606-870795,870888-871483
Length = 960
Score = 31.1 bits (67), Expect = 1.4
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 273 VGGAICMELLT--KQGWSSAYTVEAVIMQIAATLVKGKA--RIQFSATKVV-----SQTQ 323
VG ++C + + W AY + I T+ G+ ATKV+ S+T
Sbjct: 438 VGSSVCRKAKKHLSERWQMAYQSDEEISMPKDTITLGEMLEMTDRDATKVITHKISSETN 497
Query: 324 YSLARAQQSFKCLVQIHEKNGWFT 347
Y+ Q++ C V I K+GW T
Sbjct: 498 YNHDNVQKAPACPVGISSKDGWKT 521
>04_04_0463 - 25397837-25399693,25402136-25402405
Length = 708
Score = 29.9 bits (64), Expect = 3.2
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 161 RQNQRQDYLSGSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSV 220
RQ Q S SG D L K ++ + S+KN++ SI L++D +NI SV
Sbjct: 334 RQQALQAINSLGASGGTNIADALKKAMK-VIEDRSYKNSVCSIILLSDGQDTYNIS-SSV 391
Query: 221 DPDSP 225
SP
Sbjct: 392 QGASP 396
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 156 TLERLRQNQRQDYLSGSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIELVN-DSLYEWN 214
++ ++R + + S++G++ LMK L+++Y +H+ + ++ SLY+ +
Sbjct: 563 SISKMRGLELLNLTKNSLTGAIPEELGLMKGLKELYLAHNNLSLQIPETFISMTSLYQLD 622
Query: 215 IRLRSVDPDSPLH 227
I +D P H
Sbjct: 623 ISFNHLDGQVPTH 635
>10_03_0033 -
7248131-7248711,7248947-7249079,7249470-7249994,
7250545-7250764,7250913-7251145
Length = 563
Score = 28.7 bits (61), Expect = 7.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 143 RSNKDDMETEHLATLERLRQNQRQDYLSGSVSG--SLQATDRLMKELRDIYRSHSFKNNM 200
R+ D E ++T R R + D + S G S +LMK L + + S S K+N
Sbjct: 212 RAVGDGYENSPMSTNNRKRGSSSCDVSTASSPGKKSKSPVVKLMKGLLNSFNSESDKSNT 271
Query: 201 YSIELVN 207
ELVN
Sbjct: 272 LITELVN 278
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,474,306
Number of Sequences: 37544
Number of extensions: 343283
Number of successful extensions: 732
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 22
length of query: 353
length of database: 14,793,348
effective HSP length: 83
effective length of query: 270
effective length of database: 11,677,196
effective search space: 3152842920
effective search space used: 3152842920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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