Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001411-TA|BGIBMGA001411-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
(353 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 177 1e-44
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 1e-34
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 37 0.022
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 34 0.20
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 31 1.9
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 177 bits (430), Expect = 1e-44
Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 12/220 (5%)
Query: 134 PLEMVEDAGRSNKDDMETEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMKELRDIYRS 193
P E D +S K+ T ++ + + S + RLMKE +D+ R
Sbjct: 690 PSEQTLDTRKSTKEKNPDNKEKTETKIAEPSMEVARMSSSHAQRVRSKRLMKEFQDVSRK 749
Query: 194 HSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXGKDSILLNIIFKETYP 253
++S ELV+D+L+EWN++L ++D DS L+ D G ILLNI F E +P
Sbjct: 750 ---TERIFSAELVDDNLFEWNVKLHTIDGDSLLYRDMVET----GSKFILLNITFPENFP 802
Query: 254 FEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATLVKGKARIQF 313
F PPF+RV+ P I GG+VL GGAICMELLT +GWSSAYTVEAV++Q +A +VKGK RI
Sbjct: 803 FAPPFMRVLAPRIEGGFVLDGGAICMELLTPKGWSSAYTVEAVVLQFSAAVVKGKGRIDR 862
Query: 314 SATKVVSQTQYSLARAQQSFKCLVQIHEKNGWFTPPKEDG 353
+ K S+ + A+ ++K LV+ H+K GW TPPK +G
Sbjct: 863 TCKKAFSKKE-----AESAYKRLVKTHDKYGWVTPPKAEG 897
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 144 bits (349), Expect = 1e-34
Identities = 84/184 (45%), Positives = 110/184 (59%), Gaps = 6/184 (3%)
Query: 146 KDDMETEHLATLERLRQNQRQDY-LSGSVSGSLQATDRL-MKELRDIYRSHSFKNNMYSI 203
KD+ + + AT E + + +D L + + +D M+E D+Y H ++ + +
Sbjct: 479 KDEADDKD-ATTEHMDDDDSEDEGLEEDNDENSEDSDNYEMEEEVDMYTLHISQSVITRL 537
Query: 204 ELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXGKDSILLNIIFKETYPFEPPFVRVVY 263
Y W I VDP+S LH D G D ILLN+ F + +PF+PPFVRV Y
Sbjct: 538 FKFIVFAY-WTIH--RVDPESVLHKDMVQIEKQEGIDHILLNMTFTDKFPFDPPFVRVCY 594
Query: 264 PIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATLVKGKARIQFSATKVVSQTQ 323
P+I GYVL GGAICMELLT QGWSSAYT+EAVI+QI+ATLVKGKARI F TK V
Sbjct: 595 PVIQAGYVLSGGAICMELLTPQGWSSAYTIEAVIVQISATLVKGKARINFQDTKKVLGLS 654
Query: 324 YSLA 327
+ +A
Sbjct: 655 FKMA 658
Score = 62.5 bits (145), Expect = 5e-10
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 5 VDELTCRFV-GKNGKKYEIHANITETYPTTPPVWFAESEDPIVTNAVQILTNT--QGRDN 61
+DEL CRFV + +++ IH NI E+YP PP+WF+ESED VT V+ + + +
Sbjct: 385 LDELICRFVCPSSNEEHVIHCNIYESYPDPPPMWFSESEDSTVTEIVESVGGSVDATQPK 444
Query: 62 HVINQVGILLRELCKLHGVP 81
++ Q L+REL K G P
Sbjct: 445 LLLRQTQHLVRELFKQRGSP 464
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 41.9 bits (94), Expect = 8e-04
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 24/160 (15%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A RLM+E +++ + +Y + + D+L+EW+ +R PD+ G
Sbjct: 11 AVKRLMREAKELRNA----TELYHAQPLEDNLFEWHFTVRG-PPDTEF-----AGGRYHG 60
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLT--KQGWSSAYTVEAV 296
+ II YP +PP + ++ P G +G IC+ + + W ++++ V
Sbjct: 61 R------IILPPEYPMKPPSIMLLTP---NGRFEIGKKICLSMSAHHPETWQPSWSIRTV 111
Query: 297 IMQIAATL-VKGKARIQFSATKVVSQTQYSLARAQQSFKC 335
+M I + KG I A + + LAR +KC
Sbjct: 112 LMAIIGFMPTKGAGAI--GALDYTPKERAVLARKSMEWKC 149
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 37.1 bits (82), Expect = 0.022
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELL---TKQGWSSAYTVEAVIMQI 300
L+I E YPFEPP VR V PI + G IC++ L K W A + +V+ I
Sbjct: 17 LDIQIPERYPFEPPKVRFVTPIYHPN-IDSSGRICLDTLKMPPKGMWKPALNISSVLSTI 75
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 33.9 bits (74), Expect = 0.20
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
K + + I F YPF+PP + I + G +C+ +++ + W A E VI
Sbjct: 39 KGAFRIEICFPAEYPFKPPKITFKTKIYHPN-IDEKGQVCLPIISPENWKPATKTEQVIQ 97
Query: 299 QIAA 302
+ A
Sbjct: 98 ALLA 101
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 30.7 bits (66), Expect = 1.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 253 PFEPPFVRVVYPIISGGYVLVGGAICMELL---TKQGWSSAYTVEAVIMQI 300
PFEPP VR V PI + G IC++ L K W A + +V+ I
Sbjct: 40 PFEPPKVRFVTPIYHPN-IDSSGRICLDTLKMPPKGMWKPALNISSVLSTI 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,852,409
Number of Sequences: 59808
Number of extensions: 384197
Number of successful extensions: 1084
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 8
length of query: 353
length of database: 16,821,457
effective HSP length: 83
effective length of query: 270
effective length of database: 11,857,393
effective search space: 3201496110
effective search space used: 3201496110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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