Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001411-TA|BGIBMGA001411-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
(353 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 276 2e-74
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 273 1e-73
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 45 9e-05
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 45 9e-05
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 44 2e-04
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 40 0.004
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 40 0.004
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 38 0.008
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 37 0.019
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 34 0.18
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 30 2.9
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 29 3.8
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 29 3.8
Z92831-7|CAB07365.2| 355|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z92777-12|CAJ58496.1| 355|Caenorhabditis elegans Hypothetical p... 29 5.0
Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical pr... 29 5.0
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 276 bits (676), Expect = 2e-74
Identities = 155/364 (42%), Positives = 212/364 (58%), Gaps = 15/364 (4%)
Query: 1 MSASVDELTCRFVGKNGKKYEIHANITETYPTTPPVWFAESED-PIVTNAVQILTNTQGR 59
+SASVDEL+ +F+ K + ANI E YP PP+WF+ES+D P++ ++Q LT T+
Sbjct: 28 LSASVDELSMKFINAENKGIIVTANIQENYPRQPPIWFSESDDVPVIGMSLQRLTETEES 87
Query: 60 DNHVINQVGILLRELCKLHGVPEXXXXXXXXXXVHPAPPQHR---VPSVTSNXXXXXXXX 116
N +++QV L+ +LC + + V + R + TS
Sbjct: 88 TN-ILHQVHRLVSDLCSFYNLQMPCELPQIAPPVRDDIDEGRGSDISDTTSEPIDDDMAG 146
Query: 117 XXXXXXXXXXXXXXXXL--PLEMVE----DAGRSNKDDMETEHLATLERLRQNQRQDYLS 170
+E+VE D + + E L L+++ + RQ +L
Sbjct: 147 DGEVDDDDEEEEDDEDADGDIEIVEMAEEDPTSQHDVGVSKEGLDMLDKVSKINRQQHLD 206
Query: 171 GSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIEL-VNDSLYEWNIRLRSVDPDSPLHND 229
G V GS+ ATDRLMKE+RDI+RS FKN +Y+ EL ++LY+W I+L VD DSPL D
Sbjct: 207 GKVQGSITATDRLMKEIRDIHRSEHFKNGIYTFELEKEENLYQWWIKLHKVDEDSPLFED 266
Query: 230 XXXXXXXXGKDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSS 289
+D +L + F E +P +PPFVRVV P I+ G+VL GGAICMELLTKQGWSS
Sbjct: 267 MKKLKKDHNQDHLLFSFTFNEKFPCDPPFVRVVAPHINQGFVLGGGAICMELLTKQGWSS 326
Query: 290 AYTVEAVIMQIAATLVKGKARIQFSATKVVSQTQYSLARAQQSFKCLVQIHEKNGWFTPP 349
AY++E+ I+QIAATLVKG+ARI F A + YS+ARAQQSFK L QIH K+GW+TPP
Sbjct: 327 AYSIESCILQIAATLVKGRARISFDAKHT---STYSMARAQQSFKSLQQIHAKSGWYTPP 383
Query: 350 KEDG 353
K +G
Sbjct: 384 KTEG 387
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 273 bits (670), Expect = 1e-73
Identities = 154/364 (42%), Positives = 211/364 (57%), Gaps = 15/364 (4%)
Query: 1 MSASVDELTCRFVGKNGKKYEIHANITETYPTTPPVWFAESED-PIVTNAVQILTNTQGR 59
+SASVDEL+ +F+ K + ANI E YP PP+WF+ES+D P++ ++Q LT T+
Sbjct: 28 LSASVDELSMKFINAENKGIIVTANIQENYPRQPPIWFSESDDVPVIGMSLQRLTETEES 87
Query: 60 DNHVINQVGILLRELCKLHGVPEXXXXXXXXXXVHPAPPQHR---VPSVTSNXXXXXXXX 116
N +++QV L+ +LC + + V + R + TS
Sbjct: 88 TN-ILHQVHRLVSDLCSFYNLQMPCELPQIAPPVRDDIDEGRGSDISDTTSEPIDDDMAG 146
Query: 117 XXXXXXXXXXXXXXXXL--PLEMVE----DAGRSNKDDMETEHLATLERLRQNQRQDYLS 170
+E+VE D + + E L L++ + RQ +L
Sbjct: 147 DGEVDDDDEEEEDDEDADGDIEIVEMAEEDPTSQHDVGVSKEGLDMLDKASKINRQQHLD 206
Query: 171 GSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIEL-VNDSLYEWNIRLRSVDPDSPLHND 229
G V GS+ A+DRLMKE+RDI+RS FKN +Y+ EL ++LY+W I+L VD DSPL D
Sbjct: 207 GKVQGSITASDRLMKEIRDIHRSEHFKNGIYTFELEKEENLYQWWIKLHKVDEDSPLFED 266
Query: 230 XXXXXXXXGKDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSS 289
+D +L + F E +P +PPFVRVV P I+ G+VL GGAICMELLTKQGWSS
Sbjct: 267 MKKLKKDHNQDHLLFSFTFNEKFPCDPPFVRVVAPHINQGFVLGGGAICMELLTKQGWSS 326
Query: 290 AYTVEAVIMQIAATLVKGKARIQFSATKVVSQTQYSLARAQQSFKCLVQIHEKNGWFTPP 349
AY++E+ I+QIAATLVKG+ARI F A + YS+ARAQQSFK L QIH K+GW+TPP
Sbjct: 327 AYSIESCILQIAATLVKGRARISFDAKHT---STYSMARAQQSFKSLQQIHAKSGWYTPP 383
Query: 350 KEDG 353
K +G
Sbjct: 384 KTEG 387
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 44.8 bits (101), Expect = 9e-05
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 25/130 (19%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A R+ KEL+D+ R + S V D L+ W + P+SP
Sbjct: 2 ALKRIQKELQDLGRDPPAQ---CSAGPVGDDLFHWQATIMG-PPESPYQGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVE 294
L I F YPF+PP V R+ +P I+ G+IC+++L Q WS A T+
Sbjct: 50 ---FFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-----NGSICLDILRSQ-WSPALTIS 100
Query: 295 AVIMQIAATL 304
V++ I + L
Sbjct: 101 KVLLSICSLL 110
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 44.8 bits (101), Expect = 9e-05
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 25/130 (19%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A R+ KEL+D+ R + S V D L+ W + P+SP
Sbjct: 2 ALKRIQKELQDLGRDPPAQ---CSAGPVGDDLFHWQATIMG-PPESPYQGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVE 294
L I F YPF+PP V R+ +P I+ G+IC+++L Q WS A T+
Sbjct: 50 ---FFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-----NGSICLDILRSQ-WSPALTIS 100
Query: 295 AVIMQIAATL 304
V++ I + L
Sbjct: 101 KVLLSICSLL 110
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 44.0 bits (99), Expect = 2e-04
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A +RL +E +++ + IE++N++L E +R PD+P
Sbjct: 5 AFNRLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRG-PPDTPYAGGMFD------ 57
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+I + YPF PP V+ I G IC+++L K W+++ T+ V++
Sbjct: 58 -----LDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDIL-KDQWAASLTLRTVLL 111
Query: 299 QIAATL 304
I A +
Sbjct: 112 SIQALM 117
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 39.5 bits (88), Expect = 0.004
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L++ F E YP +PP V+ + + V G+IC+++L + WS Y V A++ I +
Sbjct: 55 LSLEFTEEYPNKPPTVKFISKMFHPN-VYADGSICLDILQNR-WSPTYDVAAILTSIQSL 112
Query: 304 L 304
L
Sbjct: 113 L 113
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 39.5 bits (88), Expect = 0.004
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L++ F E YP +PP V+ + + V G+IC+++L + WS Y V A++ I +
Sbjct: 55 LSLEFTEEYPNKPPTVKFISKMFHPN-VYADGSICLDILQNR-WSPTYDVAAILTSIQSL 112
Query: 304 L 304
L
Sbjct: 113 L 113
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 38.3 bits (85), Expect = 0.008
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 177 LQATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXX 236
+ AT RL KEL D+ + ++E +L +W + L PD +N
Sbjct: 1 MSATRRLQKELGDL--KNCGVKAYENVECEETNLLKWTVLLI---PDKEPYN-------- 47
Query: 237 XGKDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAV 296
K + + I F YPF+PP V I V G C+ ++T + W A E V
Sbjct: 48 --KGAFKVGITFPVDYPFKPPKVAFETKIYHPN-VDEEGKFCLPIVTAENWKPATKTEQV 104
Query: 297 IMQIAATL 304
+M + + +
Sbjct: 105 MMALLSLI 112
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 37.1 bits (82), Expect = 0.019
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 208 DSLYEWNIRLRSVDPDSPLHNDXXXXXXXXGKDSILLNIIFKETYPFEPPFVRVVYPIIS 267
D++ EW+ LR PD+P + GK +IFKE +P+ PP + ++ P
Sbjct: 46 DNILEWHYCLRG-SPDTPFYGGYYW-----GK------VIFKENFPWSPPAITMITP--- 90
Query: 268 GGYVLVGGAICMEL--LTKQGWSSAYTVEAVIMQIAATLVKGKARIQFSATKVVSQTQYS 325
G +C+ + + W+ +TV A+++ + + + + A Q Y+
Sbjct: 91 NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFMNENSPAAGSIAGTPQDQRMYA 150
Query: 326 LARAQQSFK 334
A + + K
Sbjct: 151 AASKEFNVK 159
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 33.9 bits (74), Expect = 0.18
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 252 YPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATL 304
YPF+PP+++ + + V +C +L ++ W T+E V++ + L
Sbjct: 72 YPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLL 124
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQI 300
L+I E+YPF+ P V+ + I G IC+ + W + T+ V++ I
Sbjct: 400 LDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSMTIYKVLIVI 456
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTK-QGWSSAYTVEAVIMQI 300
+ ++FK+ +P PP + P+ V G +C+ LL + + W + +++ +++ I
Sbjct: 60 IRMLFKDDFPSTPPKCKFEPPLFHPN-VYPSGTVCLSLLDENKDWKPSISIKQLLIGI 116
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTK-QGWSSAYTVEAVIMQI 300
+ ++FK+ +P PP + P+ V G +C+ LL + + W + +++ +++ I
Sbjct: 60 IRMLFKDDFPSTPPKCKFEPPLFHPN-VYPSGTVCLSLLDENKDWKPSISIKQLLIGI 116
>Z92831-7|CAB07365.2| 355|Caenorhabditis elegans Hypothetical
protein F22G12.1 protein.
Length = 355
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 150 ETEHLATLERLRQNQRQDYL---SGSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIELV 206
+T+H+ + + +N RQD L S++ A +R K + ++ RSH KN+ +E
Sbjct: 39 QTQHVERIAQKEENHRQDMLQNFKSSLAERKAAEERHNKAIEELKRSH--KNDKKKLESE 96
Query: 207 NDSL 210
+S+
Sbjct: 97 LESI 100
>Z92777-12|CAJ58496.1| 355|Caenorhabditis elegans Hypothetical
protein F22G12.1 protein.
Length = 355
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 150 ETEHLATLERLRQNQRQDYL---SGSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIELV 206
+T+H+ + + +N RQD L S++ A +R K + ++ RSH KN+ +E
Sbjct: 39 QTQHVERIAQKEENHRQDMLQNFKSSLAERKAAEERHNKAIEELKRSH--KNDKKKLESE 96
Query: 207 NDSL 210
+S+
Sbjct: 97 LESI 100
>Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 157 LERLRQNQRQDYLSGSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIR 216
LE ++QD ++ S +L+KEL ++ ++H+ N + SI L+ L +
Sbjct: 381 LEMEENQKQQDTIAAKQSTFESEKTQLLKELDEVKKAHA--NQLKSIALIKKELEDHKAA 438
Query: 217 LRSVDP 222
SV P
Sbjct: 439 APSVKP 444
>Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical
protein C14H10.2b protein.
Length = 412
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 157 LERLRQNQRQDYLSGSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIR 216
LE ++QD ++ S +L+KEL ++ ++H+ N + SI L+ L +
Sbjct: 47 LEMEENQKQQDTIAAKQSTFESEKTQLLKELDEVKKAHA--NQLKSIALIKKELEDHKAA 104
Query: 217 LRSVDP 222
SV P
Sbjct: 105 APSVKP 110
>Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 157 LERLRQNQRQDYLSGSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIR 216
LE ++QD ++ S +L+KEL ++ ++H+ N + SI L+ L +
Sbjct: 381 LEMEENQKQQDTIAAKQSTFESEKTQLLKELDEVKKAHA--NQLKSIALIKKELEDHKAA 438
Query: 217 LRSVDP 222
SV P
Sbjct: 439 APSVKP 444
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,019,274
Number of Sequences: 27539
Number of extensions: 294702
Number of successful extensions: 695
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 20
length of query: 353
length of database: 12,573,161
effective HSP length: 82
effective length of query: 271
effective length of database: 10,314,963
effective search space: 2795354973
effective search space used: 2795354973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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