GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001411-TA|BGIBMGA001411-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
         (353 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   9.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 22  IHANITETYPTTPPVW-FAESEDPIV 46
           + A +T TYPT  P W     E P+V
Sbjct: 472 VAAALTGTYPTLLPQWCLPPREAPLV 497


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 191 YRSHSFKNNMYSIELVN 207
           Y SH+ + NMY ++L N
Sbjct: 666 YVSHANQRNMYKLDLKN 682


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 157 LERLRQNQRQDYLSGSVSGSLQATDRLMKELRDIYRSHSFKNNMYSIE 204
           L R   +    YLS     +L  T     +L  +YR+ S +     +E
Sbjct: 2   LRRQETSNEDSYLSAGRPSNLLRTSFSSAKLEKLYRASSLQQRRGGLE 49


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,506
Number of Sequences: 429
Number of extensions: 3525
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 353
length of database: 140,377
effective HSP length: 58
effective length of query: 295
effective length of database: 115,495
effective search space: 34071025
effective search space used: 34071025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)