Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001411-TA|BGIBMGA001411-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
(353 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 44 2e-04
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 44 2e-04
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 44 2e-04
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 43 4e-04
At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)... 43 4e-04
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 42 5e-04
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 42 6e-04
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 42 6e-04
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 42 6e-04
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 41 0.001
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 41 0.001
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 41 0.001
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 41 0.001
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 40 0.002
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 40 0.002
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 40 0.003
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 40 0.003
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 40 0.003
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 40 0.003
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 40 0.003
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 40 0.003
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 40 0.003
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 38 0.013
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 38 0.013
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)... 37 0.023
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 36 0.054
At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)... 34 0.12
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 33 0.29
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 33 0.38
At3g04110.1 68416.m00435 glutamate receptor family protein (GLR1... 30 2.7
At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /... 29 4.7
At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /... 29 4.7
At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ... 29 4.7
At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative ... 29 6.2
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 29 6.2
At5g16500.1 68418.m01928 protein kinase family protein contains ... 28 8.2
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 44.0 bits (99), Expect = 2e-04
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R+ KELRD+ R S D +++W + DSP
Sbjct: 2 ASKRINKELRDLQRDPPVS---CSAGPTGDDMFQWQATIMG-PADSPFAGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVE 294
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A TV
Sbjct: 50 ---FLVTIHFPPDYPFKPPKVAFRTKVYHPNINS-----NGSICLDIL-KEQWSPALTVS 100
Query: 295 AVIMQIAATL 304
V++ I + L
Sbjct: 101 KVLLSICSLL 110
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 44.0 bits (99), Expect = 2e-04
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R+ KELRD+ R S D +++W + DSP
Sbjct: 2 ASKRINKELRDLQRDPPVS---CSAGPTGDDMFQWQATIMG-PADSPFAGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVE 294
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A TV
Sbjct: 50 ---FLVTIHFPPDYPFKPPKVAFRTKVYHPNINS-----NGSICLDIL-KEQWSPALTVS 100
Query: 295 AVIMQIAATL 304
V++ I + L
Sbjct: 101 KVLLSICSLL 110
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 44.0 bits (99), Expect = 2e-04
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 191 YRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXGKDSILLNIIFKE 250
YR+ K +++SI ++++YEW +R D +P L+I F
Sbjct: 17 YRAMISKESLFSIGQNSNNIYEWTAVIRGPD-GTPYEGGMFN-----------LSIKFPT 64
Query: 251 TYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATLVK 306
YPF+PP PI + G+ICM +L K W+ A VE V++ I L K
Sbjct: 65 DYPFKPPKFTFKTPIYHPN-INDEGSICMNIL-KDKWTPALMVEKVLLSILLLLEK 118
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 42.7 bits (96), Expect = 4e-04
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 25/130 (19%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R++KEL+D+ + + S V + ++ W + P+SP
Sbjct: 2 ASKRILKELKDLQKDPP---SNCSAGPVAEDMFHWQATIMG-PPESPYAGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVE 294
L++I F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+
Sbjct: 50 ---FLVSIHFPPDYPFKPPKVSFKTKVYHPNINS-----NGSICLDIL-KEQWSPALTIS 100
Query: 295 AVIMQIAATL 304
V++ I + L
Sbjct: 101 KVLLSICSLL 110
>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
E2; identical to ubiquitin-conjugating enzyme 15
GI:2801442 from [Arabidopsis thaliana]
Length = 161
Score = 42.7 bits (96), Expect = 4e-04
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L + F E YP E P V V P S ++ G IC+++L WS A TV +V + I +
Sbjct: 65 LQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDIL-YDSWSPAMTVNSVCISILSM 123
Query: 304 LVKGKAR 310
L A+
Sbjct: 124 LSSSPAK 130
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L + F E YP +PP VR V + + G+IC+++L Q WS Y V AV+ I +
Sbjct: 55 LTLHFTEDYPNKPPIVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAVLTSIQSL 112
Query: 304 L 304
L
Sbjct: 113 L 113
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L++ F E YP +PP VR V + + G+IC+++L Q WS Y V A++ I +
Sbjct: 55 LSLQFSEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 112
Query: 304 L 304
L
Sbjct: 113 L 113
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L++ F E YP +PP VR V + + G+IC+++L Q WS Y V A++ I +
Sbjct: 55 LSLQFSEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 112
Query: 304 L 304
L
Sbjct: 113 L 113
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L++ F E YP +PP VR V + + G+IC+++L Q WS Y V A++ I +
Sbjct: 55 LSLQFSEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 112
Query: 304 L 304
L
Sbjct: 113 L 113
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 41.1 bits (92), Expect = 0.001
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 25/130 (19%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R++KEL+D+ + S V + ++ W + DSP
Sbjct: 32 ASKRILKELKDLQKDPP---TSCSAGPVAEDMFHWQATIMGPS-DSPYSGGV-------- 79
Query: 239 KDSILLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVE 294
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+
Sbjct: 80 ---FLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQWSPALTIS 130
Query: 295 AVIMQIAATL 304
V++ I + L
Sbjct: 131 KVLLSICSLL 140
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 41.1 bits (92), Expect = 0.001
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 25/130 (19%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R++KEL+D+ + S V + ++ W + DSP
Sbjct: 2 ASKRILKELKDLQKDPP---TSCSAGPVAEDMFHWQATIMGPS-DSPYSGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVE 294
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+
Sbjct: 50 ---FLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQWSPALTIS 100
Query: 295 AVIMQIAATL 304
V++ I + L
Sbjct: 101 KVLLSICSLL 110
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 41.1 bits (92), Expect = 0.001
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R++KEL+D+ + S V + ++ W + DSP
Sbjct: 2 ASKRILKELKDLQKDPP---TSCSAGPVAEDMFHWQATIMGPS-DSPYSGGV-------- 49
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+ I F YPF+PP V + V G+IC+++L K+ WS A T+ V++
Sbjct: 50 ---FLVTIHFPPDYPFKPPKVAFRTKVFHPN-VNSNGSICLDIL-KEQWSPALTISKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 240 DSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQ 299
D+ L + F E YP E P V ++P ++ G IC+++L WS A TV ++ +
Sbjct: 61 DTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSICIS 119
Query: 300 IAATL 304
I + L
Sbjct: 120 ILSML 124
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 250 ETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAATL 304
E YP +PP VR + I G IC+++L K WS A+T+++V I A +
Sbjct: 62 EPYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-KNAWSPAWTLQSVCRAIIALM 115
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Query: 243 LLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+NI F YPF+PP V +V +P I+ G IC+++L K WS A T+ V++
Sbjct: 51 LVNIHFPPDYPFKPPKVVFRTKVFHPNINS-----NGNICLDIL-KDQWSPALTISKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 243 LLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+ V++
Sbjct: 51 LVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQWSPALTISKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 243 LLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+ V++
Sbjct: 51 LVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQWSPALTISKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
++I + YPFEPP ++ + GAIC+++L K WS A T++ ++ I A
Sbjct: 54 IDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDIL-KDQWSPALTLKTALVSIQAL 112
Query: 304 L 304
L
Sbjct: 113 L 113
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 243 LLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+ V++
Sbjct: 52 LVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQWSPALTISKVLL 105
Query: 299 QIAATL 304
I + L
Sbjct: 106 SICSLL 111
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 243 LLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+ V++
Sbjct: 51 LVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQWSPALTISKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 243 LLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+ V++
Sbjct: 51 LVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQWSPALTISKVLL 104
Query: 299 QIAATL 304
I + L
Sbjct: 105 SICSLL 110
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L++ F YPF+PP V+ V V G IC+++L + WSSAY V +++ I +
Sbjct: 86 LSLSFSNDYPFKPPKVKFETCCFHPN-VDVYGNICLDIL-QDKWSSAYDVRTILLSIQSL 143
Query: 304 L 304
L
Sbjct: 144 L 144
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L + F + YP E P V V P ++ G IC+++L WS A TV +V + I +
Sbjct: 65 LQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDIL-YDSWSPAMTVSSVCISILSM 123
Query: 304 L 304
L
Sbjct: 124 L 124
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 37.5 bits (83), Expect = 0.013
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 179 ATDRLMKELRDIYRSHSFKNNMYSIELVNDSLYEWNIRLRSVDPDSPLHNDXXXXXXXXG 238
A+ R+ +ELRD+ R H N + + + ++ W + DSP
Sbjct: 2 ASKRISRELRDMQR-HP-PANCSAGPVAEEDIFHWQATIMGPH-DSPYSGGVFT------ 52
Query: 239 KDSILLNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
++I F YPF+PP V + + G+IC+++L K+ WS A T V++
Sbjct: 53 -----VSIDFSSDYPFKPPKVNFKTKVYHPN-IDSKGSICLDIL-KEQWSPAPTTSKVLL 105
Query: 299 QIAATL 304
I + L
Sbjct: 106 SICSLL 111
>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
nearly identical to ubiquitin-conjugating enzyme UBC19
[Arabidopsis thaliana] GI:22530865; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 181
Score = 36.7 bits (81), Expect = 0.023
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L++ F YPF+ P V+ L G IC+++L + WSSAY V +++ I +
Sbjct: 87 LSLTFSNDYPFKSPKVKFETCCFHPNVDLYGN-ICLDILQDK-WSSAYDVRTILLSIQSL 144
Query: 304 L 304
L
Sbjct: 145 L 145
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 35.5 bits (78), Expect = 0.054
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 243 LLNIIFKETYPFEPPFV----RVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIM 298
L+ I F YPF+PP V +V +P I+ G+IC+++L K+ WS A T+ V +
Sbjct: 51 LVTIHFPPDYPFKPPKVAFRTKVFHPNINS-----NGSICLDIL-KEQWSPALTISKVTL 104
>At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)
E2; identical to gi:2801446
Length = 161
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L + F E YP E P V +P ++ G IC+++L WS A + ++ + I +
Sbjct: 65 LQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVL-YDSWSPAMRLSSICLSILSM 123
Query: 304 L 304
L
Sbjct: 124 L 124
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 33.1 bits (72), Expect = 0.29
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLT---KQGWSSAYTVEAVIMQI 300
L I E YPF+PP V PI + G IC+++L K W + + V+ +
Sbjct: 66 LKIQIPERYPFQPPIVSFATPIYHPN-IDNSGRICLDILNLPPKGAWQPSLNISTVLTSM 124
Query: 301 AATL 304
L
Sbjct: 125 RLLL 128
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 244 LNIIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMELLTKQGWSSAYTVEAVIMQIAAT 303
L+IIF YPF+PP + V I V G + + +L + WS A T+ V+ I +
Sbjct: 87 LDIIFPSDYPFKPPKL-VFKTRIYHCNVDTAGDLSVNIL-RDSWSPALTITKVLQAIRSI 144
Query: 304 LVK 306
+K
Sbjct: 145 FLK 147
>At3g04110.1 68416.m00435 glutamate receptor family protein (GLR1.1)
(GLR1) identical to putative glutamate receptor (GLR1)
GB:AF079998 [Arabidopsis thaliana]; plant glutamate
receptor family, PMID:11379626
Length = 808
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 147 DDMETEHLATLERLRQNQRQDYLSG-----SVSGSLQATDRLMKELRDIYRSHSFKNNMY 201
DD ETEH + + LR + L+ SVSG ++A+ + +L D R FK
Sbjct: 299 DDTETEHSSVIIGLRAHDIACILANAVEKFSVSGKVEASSNVSADLLDTIRHSRFKGLSG 358
Query: 202 SIEL 205
I++
Sbjct: 359 DIQI 362
>At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 288 SSAYTVEAVIMQIAATLVKGKARIQFSATKVVSQTQ 323
SS T+ + I + LVK + R+ F+ +KV QT+
Sbjct: 35 SSLRTINGIFSIIPSRLVKNQTRLDFAESKVARQTR 70
>At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 288 SSAYTVEAVIMQIAATLVKGKARIQFSATKVVSQTQ 323
SS T+ + I + LVK + R+ F+ +KV QT+
Sbjct: 35 SSLRTINGIFSIIPSRLVKNQTRLDFAESKVARQTR 70
>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 237
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 246 IIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMEL--LTKQGWSSAYTVEAVIMQIAAT 303
I F YP++PP + + P G + IC+ + + W+ ++V +++ + +
Sbjct: 58 IKFPPEYPYKPPGITMTTP---NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSF 114
Query: 304 LVKGKARIQFSATKVVSQTQYSLARAQQSFKC 335
++ T V+ + + LA++ +F C
Sbjct: 115 MMDTSPTTGSVNTTVIEKQR--LAKSSLAFNC 144
>At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 243
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 246 IIFKETYPFEPPFVRVVYPIISGGYVLVGGAICMEL--LTKQGWSSAYTVEAVIMQIAAT 303
I F YP++PP + + P G + IC+ + + W+ ++V +++ + +
Sbjct: 58 IKFPPEYPYKPPGITMTTP---NGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSF 114
Query: 304 LVKGKARIQFSATKVVSQTQYSLARAQQSFKC 335
++ T V + + LA++ +F C
Sbjct: 115 MMDNSPTTGSVNTSVAEKQR--LAKSSLAFNC 144
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 170 SGSVSGSLQATDRLMKELRDIYRSHS 195
SGS SG + ++ K L D Y+SHS
Sbjct: 68 SGSASGKPSVSSQMAKRLDDAYKSHS 93
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 139 EDAGRSNKDDMETEHLATLERLRQNQRQDYLSGSVSGSLQATDRLMKELRDIYRSHS 195
+D SN + + E + LE+ R++ SGS S+ T+ + L+ Y ++S
Sbjct: 439 DDESDSNSEKDQEEEQSQLEKARESSSSSSDSGSERRSIDETNATAQSLKISYSNYS 495
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,676,941
Number of Sequences: 28952
Number of extensions: 282167
Number of successful extensions: 695
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 38
length of query: 353
length of database: 12,070,560
effective HSP length: 82
effective length of query: 271
effective length of database: 9,696,496
effective search space: 2627750416
effective search space used: 2627750416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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