Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001409-TA|BGIBMGA001409-PA|undefined
(69 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0647 + 16551583-16552275,16554434-16555207 27 1.9
04_01_0053 + 551027-553024 26 3.3
03_02_0918 + 12381662-12383118,12383249-12384707 26 3.3
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 26 4.3
04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309... 26 4.3
11_01_0405 + 3079275-3079622,3079816-3079903,3081411-3081543,308... 25 5.7
11_03_0216 + 11821726-11821860,11823217-11823286,11823704-118238... 25 7.5
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 25 7.5
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 25 9.9
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 25 9.9
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 25 9.9
>05_03_0647 + 16551583-16552275,16554434-16555207
Length = 488
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 9 ERLIVVGNTEGKGHGAKHQL-----KGEEPPQKFYDVVTDVTDRNGWCEYVR 55
ERL+ + G G A+HQL G EP + YDVV + G VR
Sbjct: 331 ERLLSLYTCAGCGLEAEHQLWEMKLLGREPDTQLYDVVLAICASQGEVAAVR 382
>04_01_0053 + 551027-553024
Length = 665
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 49 GWCEYVRATRVITDYDHNG 67
GWC RA ++ +Y HNG
Sbjct: 420 GWCLEKRALLLVYEYKHNG 438
>03_02_0918 + 12381662-12383118,12383249-12384707
Length = 971
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 26 HQLKGEEPPQKFYDVV--TDVTDRNGWC 51
+QL G+ PP F+D + + V+D G C
Sbjct: 539 NQLSGDLPPGSFFDTIPLSSVSDNPGLC 566
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 25 KHQLKGEEPPQKFYDVVTDVTDRNGWCEYVRATRVITDYDHNG 67
+H LK +KF ++ DV + + W E+ + + HNG
Sbjct: 533 QHILKENLESKKFLLILDDVWEDSNWGEWQKLMAPFQNRPHNG 575
>04_03_0681 +
18628107-18629346,18630476-18630486,18630836-18630943,
18631158-18631250
Length = 483
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 30 GEEPPQKFYDVVTDVTDRNGWCEYV 54
G P D+V DVT R+GW +++
Sbjct: 245 GGSPDGPCVDLVRDVTCRDGWFKFI 269
>11_01_0405 +
3079275-3079622,3079816-3079903,3081411-3081543,
3081642-3082395
Length = 440
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 13 VVGNTEGKGHGAKHQLKGEEP 33
++G+ GK HGA H+L P
Sbjct: 26 ILGHRRGKSHGAVHELHDPVP 46
>11_03_0216 +
11821726-11821860,11823217-11823286,11823704-11823861,
11824304-11824479,11824564-11824612,11825293-11825430
Length = 241
Score = 25.0 bits (52), Expect = 7.5
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 43 DVTDRNGWCEYVRATRVITDYDHNGHD 69
++ D +GW ++++ ++ +D G+D
Sbjct: 9 ELPDGSGWGDHIQLLQIFESWDRTGYD 35
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 37 FYDVVTDVTDRNGWCEYVRATRVIT 61
F D V D+T + C+Y T +T
Sbjct: 203 FSDAVIDLTQKQALCKYANGTNPLT 227
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 16 NTEGKGHGAKHQLKGEEPPQKF 37
N +G G A Q GE+PP +F
Sbjct: 625 NGQGFGQSASPQGDGEQPPMQF 646
>02_05_0311 +
27782110-27782326,27784121-27784268,27784394-27784478,
27784555-27784650,27785666-27785731,27785900-27785998,
27786145-27786258,27786468-27786578,27786672-27786734,
27786816-27786908,27787960-27788073,27788440-27788505,
27788782-27788994,27789086-27789116,27789459-27791587
Length = 1214
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 43 DVTDRNGWCEYVRAT 57
+V D NG CEY+R+T
Sbjct: 481 NVRDVNGMCEYMRST 495
>01_01_0571 -
4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 24.6 bits (51), Expect = 9.9
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 53 YVRATRVITDYDHNG 67
Y++AT++ T++D NG
Sbjct: 255 YIKATKLFTEFDSNG 269
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.137 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,581
Number of Sequences: 37544
Number of extensions: 88384
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 11
length of query: 69
length of database: 14,793,348
effective HSP length: 49
effective length of query: 20
effective length of database: 12,953,692
effective search space: 259073840
effective search space used: 259073840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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