GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001409-TA|BGIBMGA001409-PA|undefined
         (69 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF467287-1|AAM53530.1| 2851|Homo sapiens beige-like protein prot...    29   2.3  
AF216648-1|AAG48558.2| 2863|Homo sapiens LPS responsive and Beig...    29   2.3  

>AF467287-1|AAM53530.1| 2851|Homo sapiens beige-like protein
           protein.
          Length = 2851

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 12  IVVGNTEGKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGW 50
           ++V + + KG G +H +K +  PQK+Y +VT V   N W
Sbjct: 274 LIVTSIKSKGKGFQHCVKFDFKPQKWY-MVTIVHIYNRW 311


>AF216648-1|AAG48558.2| 2863|Homo sapiens LPS responsive and
           Beige-like anchor protein LRBA protein.
          Length = 2863

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 12  IVVGNTEGKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGW 50
           ++V + + KG G +H +K +  PQK+Y +VT V   N W
Sbjct: 274 LIVTSIKSKGKGFQHCVKFDFKPQKWY-MVTIVHIYNRW 311


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,255,865
Number of Sequences: 224733
Number of extensions: 381805
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 2
length of query: 69
length of database: 73,234,838
effective HSP length: 48
effective length of query: 21
effective length of database: 62,447,654
effective search space: 1311400734
effective search space used: 1311400734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)