Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001408-TA|BGIBMGA001408-PA|IPR007087|Zinc finger,
C2H2-type
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.005
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 35 0.033
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.077
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 32 0.31
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 31 0.54
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 31 0.54
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 31 0.54
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 30 0.95
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 29 1.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 29 2.2
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 2.2
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 29 2.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 3.8
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 28 5.1
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 28 5.1
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 5.1
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 6.7
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 27 8.9
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 8.9
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.9 bits (84), Expect = 0.005
Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 12/208 (5%)
Query: 270 RSLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKR 329
+S E + + E E S + S +++++ +SE+SS+ S + +++ V + K+
Sbjct: 76 KSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSES-EEEVIVKTEEKK 134
Query: 330 KSGNPTRCSQNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEE 389
+S S+++ S S+EE + + SS + E S + + EE
Sbjct: 135 ESS-----SESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEE 189
Query: 390 IAVDTESLTRVKAXXXXXXXXXAPSVVREG-LRLRSDLYTPSDSGSDLH-----AMEERL 443
+ TE + + S G SD + S S + A EER
Sbjct: 190 VVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERP 249
Query: 444 TRARSPSASSDRTDERDVNELEIPIDDE 471
+ PS S+ T V L +DD+
Sbjct: 250 AKITKPSQDSNETCTVFVGRLSWNVDDQ 277
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 35.1 bits (77), Expect = 0.033
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 470 DENPDRC--TACGKIFQNHFTLRMHYRNDHLKLLHPCDVNGCDAAFPSRRSRDRHSSNVD 527
+E P C T C K F L++H R C +GCDA F +++ +RH ++
Sbjct: 49 NERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERH---IE 105
Query: 528 LHRR 531
+HR+
Sbjct: 106 VHRK 109
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 479 CGKIFQNHFTLRMHYRNDHLKLLHPCDVNGCDAAF 513
CGK + L H R + CD GC AF
Sbjct: 30 CGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAF 64
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 91 CLKTFCDKGALKSHFSAVHLREMHKCTVEGCTMMFXXXXXXXXXXANPN-PKLHSPHVRR 149
C K+F ALK H S +H M + C F K H P++
Sbjct: 243 CKKSFTRSSALKKHISVIHEGNM-AFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYINE 301
Query: 150 KISAHDG 156
HDG
Sbjct: 302 CGIKHDG 308
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.9 bits (74), Expect = 0.077
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 305 ETSSNR-SEPPTALDDKASVPNKRKRKSGNPTRCSQNNEY---SVSDEEYQGDLFRNL 358
E+S+N+ SE PT L K V NK + K+G SQ NEY ++E G L NL
Sbjct: 508 ESSTNKISENPTTLSSK--VENKNEPKTGENKEPSQTNEYVNCKQENKELSGQLSGNL 563
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 31.9 bits (69), Expect = 0.31
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 339 QNNEYSVSDEEYQGDLFRN----LSTPGSSRADDEPLSLKKQKPEDLLTFRNGEEIAVDT 394
Q ++ +D DL N ++ PG+ D LK+ + +R+ A++
Sbjct: 181 QRSQSFYNDTRRSSDLGANAADFVTPPGNVANSDNIRILKRNSIATIGNYRSPS--ALEK 238
Query: 395 ESLTRVKAXXXXXXXXXAPSVVREGLRLRSDLYTPSDSGSDLH-AMEERLTRARSPSASS 453
A AP R L + SDLY S+SGS + +E + S +SS
Sbjct: 239 RRSISYGAVQSVQGRPLAPIPGRRPLSISSDLYNDSNSGSHSNDDSDETKLKQSSTESSS 298
Query: 454 DRTDERD 460
+ DE+D
Sbjct: 299 ELLDEKD 305
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 31.1 bits (67), Expect = 0.54
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 560 DIKGLATTLESL-RYNG--NEEATQFPSYVTETMKFYSRNLTALQAGMFPRFGDRSFFPA 616
+ G+ T ++L + +G E Q P V + M FYS++ L+ G P F R
Sbjct: 167 EFTGMPTEWQALLKVSGITKSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPF-PRESTEK 225
Query: 617 PFLMGNGFPQAGGPYGVSAGAQSARESMS------PLSASSPPVIS 656
P L + + SA + S+R S P S+SS P++S
Sbjct: 226 PLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLS 271
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 31.1 bits (67), Expect = 0.54
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 286 LSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQNNEYSV 345
L K S + V+ ET +N EP TAL+ ++ ++ R S S E
Sbjct: 785 LKAKKGASSSSTAESKVEDETFTNDIEPTTALNSTSTQETEKSRASVTQRPSSLQQEIDD 844
Query: 346 SDE 348
SDE
Sbjct: 845 SDE 847
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 31.1 bits (67), Expect = 0.54
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 475 RCTACGKIFQNHFTLRMHYRNDHLKLLHPCDVNGCDAAFPSRRSRDRH 522
RCT C + F +L++H + + CD GC AF R + RH
Sbjct: 469 RCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRH 516
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.3 bits (65), Expect = 0.95
Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 1/192 (0%)
Query: 281 DEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQN 340
DE + S + S DN ++ S++ S S + +S G+ + S +
Sbjct: 110 DESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSS 169
Query: 341 NEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEEIAVDTESLTRV 400
+ S S E + + S ++D S E + + + + S +
Sbjct: 170 SSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESES 229
Query: 401 KAXXXXXXXXXAPSVVREGLRLRSDLYTPSDSGSDLHAMEERLTRARSPSASSDRTDERD 460
+ + S + SDS S+ + + + S S +D D
Sbjct: 230 SSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSD 289
Query: 461 VNELEIPIDDEN 472
+E E +D +
Sbjct: 290 -SESESSSEDSD 300
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 29.5 bits (63), Expect = 1.7
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 266 DNNIRSLNIERHNYDDEPEDLSVNKKRDSG-DNKTALVKSETSSNRSEPPTALDDKASVP 324
++N S N++ N +EPE +KK + D+ L + + N ++ T LDD
Sbjct: 57 NSNKESTNLDDLNMLEEPEHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDLNMSE 116
Query: 325 NKRKRKSGNPTRCSQNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSL---KKQKPE 379
+ S N + +N ++ + E Q + P ++ P K +KPE
Sbjct: 117 EPKHHDSSNKESTNLDNS-NMDESENQKNFKIEEPKPSGDFRNEGPKQCDDSKIEKPE 173
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 347 DEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEEIAVDTESLTR 399
D++Y ++ RN + R + LS KK E+L+ F N EE TE+ R
Sbjct: 46 DDKYATEVHRNEALSERIRELEAKLSAKKSFDEELVKFHNLEEKLQLTETKCR 98
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 309 NRSEPPTALDDKASVPNKRKRKSGNPTRCSQNNEYSVSDEEY 350
+ +EP +++ P +R+ +S + + S NNE+ +++EY
Sbjct: 785 HETEPSHYEEEEEEEPEERREESSHFSESSGNNEFEETEQEY 826
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 418 EGLRLRSDLYTPSDSGSDLHAMEERLTRARS 448
+GL +RS LY +GS LHA+ + +T++ S
Sbjct: 351 KGLEIRSSLYQNRYTGSLLHAINKTVTKSGS 381
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 28.3 bits (60), Expect = 3.8
Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 11/209 (5%)
Query: 283 PEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQNNE 342
P + N +S +N + S S + P+ L V K +G S +
Sbjct: 96 PSNTGANITTNSNNNAQTISSSSQSVGHIDNPSGLGTHGKVRLSIKLSTGGSGGSSVTGK 155
Query: 343 YSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEEIAVDTESLTRVKA 402
+ + + + R P S+ PE + N ++ A + A
Sbjct: 156 RTAPGNPW--------AIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSLYAAAAASA 207
Query: 403 XXXXXXXXXAP---SVVREGLRLRSDLYTPSDSGSDLHAMEERLTRARSPSASSDRTDER 459
A +V + L T S S H E L+ + + +
Sbjct: 208 ARHSMSAAYASFTGTVYDSNGNVIKGLDTSSSLSSSSHPSHEALSTIDTKNLQALAASAA 267
Query: 460 DVNELEIPIDDENPDRCTACGKIFQNHFT 488
+ + P+D+E DR + K FQ+ T
Sbjct: 268 PSSCRQQPVDEERQDRVSKISKHFQDSGT 296
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 282 EPEDLSVNKKRDSGDNKTALVKSETSSNRS---EPPTALDDKASVPNKRKRKSGNPTRCS 338
E DLS++ D D K KSE +S+ S +PP + + N+ ++ + +
Sbjct: 273 EDSDLSLSSDSDD-DEKKQPSKSEKTSSMSVSIKPPKIIRKGSKEQNRIAKEKASGAPLT 331
Query: 339 QNNEYSVSDEEYQGD-LFRNLSTPGSSRAD 367
++ ++ + EY + L R+ S P + D
Sbjct: 332 KSKSHNDTSTEYDSNSLRRSRSNPAFANDD 361
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Query: 269 IRSLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRK 328
+ +N+ N E E L K+ ++ ++ + + ET+S + + ++ A+
Sbjct: 420 VEQINVNEENNTPETEGLEDEKEENNTAAESLINQEETTSGEAVTKSTVESSANEEEAEP 479
Query: 329 RK--SGNPTRCSQNNEYSVSDEEYQGDLFRNLSTPG--SSRADDEPLSLKKQKPEDLLTF 384
+ N + N E ++EE + + + + G + + PL K+ +D +
Sbjct: 480 NEIIEENAVKSLLNQEGPATNEEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSP 539
Query: 385 RNGEEIAVD 393
E+I +
Sbjct: 540 AAAEDIGTN 548
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 326 KRKRKSGNPTRCSQNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFR 385
KRK+ P + ++ + S+ + LF+ L T S + + KQK DLL FR
Sbjct: 774 KRKKDKKPPLFKAHDHWNNTSNLKDSAVLFKVLQTSRSMAFTCQEIENMKQKAFDLLEFR 833
Query: 386 N 386
N
Sbjct: 834 N 834
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 325 NKRKRKSGNPTRCSQNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTF 384
+ RKRK+ P +Q++ S+EE G G D E +Q +DLL F
Sbjct: 92 SSRKRKN-LPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEF 150
Query: 385 RNGEEIAVDTE 395
E A+ E
Sbjct: 151 NAAETDAMAKE 161
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 275 ERHNYDDEPEDLSVNKKRDSG-DNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGN 333
++ + D P S+ K ++G D T+ S ++N+S P ++++ KAS ++ +
Sbjct: 400 QKTSNSDMPTANSMPVKLENGTDYSTSQEPSSNANNQSSPTSSINGKAS--SESANGTSY 457
Query: 334 PTRCSQNNEYSVSDEE 349
S+ N + +DEE
Sbjct: 458 SKGSSRRNSKNETDEE 473
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 470 DENPDRCTACGKIFQNHFTLRMHYRNDHLKL 500
+ P RC C K ++N L+ H + HL++
Sbjct: 395 ENKPYRCEVCSKRYKNLNGLKYHRTHSHLQV 425
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.131 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,320
Number of Sequences: 5004
Number of extensions: 122735
Number of successful extensions: 335
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 28
length of query: 703
length of database: 2,362,478
effective HSP length: 78
effective length of query: 625
effective length of database: 1,972,166
effective search space: 1232603750
effective search space used: 1232603750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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