Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001408-TA|BGIBMGA001408-PA|IPR007087|Zinc finger,
C2H2-type
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 36 0.069
At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family pr... 36 0.12
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 35 0.16
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 35 0.16
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 35 0.16
At4g26780.1 68417.m03857 co-chaperone grpE family protein simila... 34 0.28
At5g24290.2 68418.m02858 integral membrane family protein contai... 34 0.37
At5g19360.1 68418.m02307 calcium-dependent protein kinase, putat... 33 0.65
At5g53930.1 68418.m06710 expressed protein 32 1.1
At5g24290.1 68418.m02857 integral membrane family protein contai... 32 1.5
At3g20490.1 68416.m02595 expressed protein 32 1.5
At5g51130.1 68418.m06340 expressed protein contains similarity t... 31 2.0
At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family... 31 2.6
At4g00450.1 68417.m00062 expressed protein 31 2.6
At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam... 31 2.6
At5g50670.1 68418.m06279 squamosa promoter-binding protein, puta... 31 3.5
At5g50570.2 68418.m06264 squamosa promoter-binding protein, puta... 31 3.5
At5g50570.1 68418.m06263 squamosa promoter-binding protein, puta... 31 3.5
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 31 3.5
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 31 3.5
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 30 4.6
At1g60640.1 68414.m06826 expressed protein 30 4.6
At1g55600.1 68414.m06364 WRKY family transcription factor simila... 30 4.6
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 30 4.6
At5g54410.1 68418.m06777 hypothetical protein 30 6.0
At3g22410.1 68416.m02827 expressed protein 30 6.0
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 30 6.0
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 30 6.0
At5g62230.1 68418.m07814 leucine-rich repeat family protein / pr... 29 8.0
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 8.0
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 8.0
At5g52230.1 68418.m06483 expressed protein 29 8.0
At5g07180.1 68418.m00818 leucine-rich repeat family protein / pr... 29 8.0
At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein ... 29 8.0
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 8.0
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 8.0
At3g06340.1 68416.m00731 DNAJ heat shock N-terminal domain-conta... 29 8.0
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 29 8.0
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 36.3 bits (80), Expect = 0.069
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 457 DERDVNELEIPIDDENPDRCTACGKIFQNHFTLRMHYRNDHLKLLHPCDVNGCDAAFPSR 516
+ERD E+ + + C CG F+ L+ H ++ L+ C V+ C A++ +
Sbjct: 49 EERDDEACEVDEESSSNHTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRK 108
Query: 517 RSRDRH 522
+RH
Sbjct: 109 DHLNRH 114
>At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family
protein
Length = 592
Score = 35.5 bits (78), Expect = 0.12
Identities = 42/200 (21%), Positives = 77/200 (38%), Gaps = 8/200 (4%)
Query: 267 NNIRSLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNK 326
NN+ + N N E N D G+N AL SE ++ E P +++ + +
Sbjct: 232 NNLFNFNNGGGNNGVEASSWGFNLNPDQGENDPALWISEPTNTGIESPARVNNGNNSNSN 291
Query: 327 RKRKSGNPTRCSQNNEYSVSDEEYQGDLF--RNLSTPGSSRADDEPLSL----KKQKPED 380
K S ++ +N+ SV ++ Q ++L+ G +E LS +K
Sbjct: 292 SKSDSHQISKLEKNDISSVENQNRQSSCLVEKDLTFQGGLLKSNETLSFCGNESSKKRTS 351
Query: 381 LLTFRNGEEIAVDTESLTRVKAXXXXXXXXXAPSVVREGLRLRSDLYTPSDSG-SDLHAM 439
+ N +E + ++ R A A SVV+E + + P G +
Sbjct: 352 VSKGSNNDEGMLSFSTVVRSAANDSDHSDLEA-SVVKEAIVVEPPEKKPRKRGRKPANGR 410
Query: 440 EERLTRARSPSASSDRTDER 459
EE L + ++ ++R
Sbjct: 411 EEPLNHVEAERQRREKLNQR 430
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 35.1 bits (77), Expect = 0.16
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 606 PRFGDRSFFPAPFLMGNGFPQAGGPYGVSAGAQSARESMSPLSASSPPVISPG 658
P G S FP P GFP +G P GV +G S P+ SPP + PG
Sbjct: 133 PLVGGGSSFPQP----GGFPASGPPGGVPSGPPSGAR---PIGFGSPPPMGPG 178
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 35.1 bits (77), Expect = 0.16
Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 6/196 (3%)
Query: 270 RSLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKR 329
R +E+ ++E L +++ K S SN+ + DD S P++R+R
Sbjct: 657 RKYQLEKRKQEEELRRLKQEEEKFQRI-KEQWKSSTPGSNKRKDRVEDDDGESKPSERRR 715
Query: 330 KSGNPTRCSQNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEE 389
K G R + S Y+ D + + +DE + + ED +T + EE
Sbjct: 716 KKGGKRR---KKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNR-EDEMTTQEAEE 771
Query: 390 IAVDTESLTRVKAXXXXXXXXXAPSVVREGLRLRSDLYTPSDSGSDLHAMEERLTRARSP 449
VD ++ + A V G+R R L + + G + + +
Sbjct: 772 -PVDDDAHDLLAAAGLEDPDVDDDEVPTSGVRRRRALSSSDEEGELMEESHPNSSPQKEK 830
Query: 450 SASSDRTDERDVNELE 465
S+ + ++ E E
Sbjct: 831 EESNGEAGDPNMEEEE 846
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 35.1 bits (77), Expect = 0.16
Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 6/196 (3%)
Query: 270 RSLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKR 329
R +E+ ++E L +++ K S SN+ + DD S P++R+R
Sbjct: 869 RKYQLEKRKQEEELRRLKQEEEKFQRI-KEQWKSSTPGSNKRKDRVEDDDGESKPSERRR 927
Query: 330 KSGNPTRCSQNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEE 389
K G R + S Y+ D + + +DE + + ED +T + EE
Sbjct: 928 KKGGKRR---KKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNR-EDEMTTQEAEE 983
Query: 390 IAVDTESLTRVKAXXXXXXXXXAPSVVREGLRLRSDLYTPSDSGSDLHAMEERLTRARSP 449
VD ++ + A V G+R R L + + G + + +
Sbjct: 984 -PVDDDAHDLLAAAGLEDPDVDDDEVPTSGVRRRRALSSSDEEGELMEESHPNSSPQKEK 1042
Query: 450 SASSDRTDERDVNELE 465
S+ + ++ E E
Sbjct: 1043 EESNGEAGDPNMEEEE 1058
>At4g26780.1 68417.m03857 co-chaperone grpE family protein similar
to chaperone GrpE type 2 [Nicotiana tabacum] GI:3851640;
contains Pfam profile PF01025: co-chaperone GrpE
Length = 327
Score = 34.3 bits (75), Expect = 0.28
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Query: 271 SLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRK 330
S ++R N+ S KK + +KT+ K +N+ + D + KRKRK
Sbjct: 59 SFALQRFNFSSSTSPESDEKKTHTEASKTSEEKPTAEANQPGLDSESKDSVTDSAKRKRK 118
Query: 331 SGNPTRCSQNNEYSVS-DEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEE 389
S + S S D+E D L ++ +K+ K + L T+ E
Sbjct: 119 GAKGAASSSSESDSESDDDELSADDLVKLVAEKEELLSEKEEEIKQLKDKVLRTYAEMEN 178
Query: 390 I 390
+
Sbjct: 179 V 179
>At5g24290.2 68418.m02858 integral membrane family protein contains
Pfam domain PF01988: Integral membrane protein
Length = 534
Score = 33.9 bits (74), Expect = 0.37
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Query: 268 NIRSLNIERHNYDDEPEDLSVNKKR--DSGDNKTALVKSETSSNRSEPPTALDDKAS-VP 324
N + +E N + +D V + ++G N+ +SET SN L+ ++ +P
Sbjct: 60 NTTEIELEEDNDGSQAQDPIVLESTVSETGSNE----ESETGSNEENGNNWLESSSTNLP 115
Query: 325 NKRKRKSGNPTRCS-----QNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPE 379
N ++ N C +NNE S+SD E + +L + L T + +E ++
Sbjct: 116 NVENKRQRNGEDCEIEEEEENNERSLSDSEEKSNLEKLLGTQENYELGNEDEEKNERSSS 175
Query: 380 DLLTFRNGEEIAVDTES 396
D N E + E+
Sbjct: 176 DSEEKSNLENLLATQEN 192
>At5g19360.1 68418.m02307 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748
Length = 523
Score = 33.1 bits (72), Expect = 0.65
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 625 PQAGGPYGVSAGAQSARESMSPLSASSPPVISPGRLDAANARPREDAK---LLFRETSES 681
P+ GG GV A S R S P AS PP G + RP ED K L +E
Sbjct: 20 PENGGG-GVGAAEASVRASKHP-PASPPPATKQGPIGPVLGRPMEDVKSSYTLGKELGRG 77
Query: 682 FKKMTSLCERQ 692
+T LC ++
Sbjct: 78 QFGVTHLCTQK 88
>At5g53930.1 68418.m06710 expressed protein
Length = 529
Score = 32.3 bits (70), Expect = 1.1
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 287 SVNKKRDSGDN--KTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQNNEYS 344
SV KK+ + K +K E+ S+ S+ + K+KR+S + S+ YS
Sbjct: 20 SVKKKKSKRNKSKKIRRIKDESESSGSDSSLYSSSEDDYRRKKKRRSKLSKKRSRKR-YS 78
Query: 345 VSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQK 377
S+ + D R L S+ DE + KK+K
Sbjct: 79 SSESDDDSDDDRLLKKKKRSKRKDENVGKKKKK 111
>At5g24290.1 68418.m02857 integral membrane family protein contains
Pfam domain PF01988: Integral membrane protein
Length = 550
Score = 31.9 bits (69), Expect = 1.5
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 303 KSETSSNRSEPPTALDDKAS-VPNKRKRKSGNPTRCS-----QNNEYSVSDEEYQGDLFR 356
+SET SN L+ ++ +PN ++ N C +NNE S+SD E + +L +
Sbjct: 109 ESETGSNEENGNNWLESSSTNLPNVENKRQRNGEDCEIEEEEENNERSLSDSEEKSNLEK 168
Query: 357 NLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEEIAVDTES 396
L T + +E ++ D N E + E+
Sbjct: 169 LLGTQENYELGNEDEEKNERSSSDSEEKSNLENLLATQEN 208
>At3g20490.1 68416.m02595 expressed protein
Length = 458
Score = 31.9 bits (69), Expect = 1.5
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 295 GDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQNNEYSVSDEEYQGDL 354
GDN+ L + + S+R P D S KR R+ NP +CS ++ SV+ E+ D+
Sbjct: 40 GDNEPELGLTVSDSDRELEP----DFTSPVLKRLRRGINPNKCSVKDDRSVAVEDRDDDI 95
Query: 355 FRNLSTP 361
S+P
Sbjct: 96 -EEFSSP 101
>At5g51130.1 68418.m06340 expressed protein contains similarity to
unknown protein (pir||T26512)
Length = 318
Score = 31.5 bits (68), Expect = 2.0
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 288 VNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQNNEYSVSD 347
+ + D NK +S + E A ++K K+K++ G C+Q+ + +
Sbjct: 1 MGRDNDQKKNKKKRNRSNENEKSVEKVVANEEKVPTQQKQKQQQGQQGNCNQSKK-KKNQ 59
Query: 348 EEYQGDLFRNLSTPGSSRADDEPLSLKKQKPE 379
E Y +RN S DE LK K E
Sbjct: 60 EVYPFGNYRNYYGYRISNDTDEDPRLKVLKKE 91
>At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 503
Score = 31.1 bits (67), Expect = 2.6
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 607 RFGDRSFFPAPFLMGNGFPQAGGPY-GVSAGAQSARESMSPLSASSPPVISPGRLDAANA 665
+ GD+ P N FP P G+S S R S+ P S+S+ PVI P +L A
Sbjct: 427 QLGDKETLPIYLRDHNPFPSNPSPSTGISTINWSFRPSVVPGSSSNLPVIHPPKLPPGYA 486
Query: 666 RPR 668
R
Sbjct: 487 EIR 489
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 31.1 bits (67), Expect = 2.6
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 292 RDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQNNEYSVSDEEYQ 351
RD N S +P + KR + + + C Q N SDEE
Sbjct: 758 RDEFQNSVKRSSGSVYSKMDQPEATPGCEDCRRAKRPKMNDEKSSCYQGNSPIASDEEDN 817
Query: 352 GDLFRNLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEEIAVDTESLTRVKA 402
+ + T SS D + + KQ P R +++A T+SL +++A
Sbjct: 818 WWIKKGSKTVESSLKVDPQIEITKQVP------RGRQKMARKTQSLAQLQA 862
>At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam
PF03467: Smg-4/UPF3 family; similar to hUPF3B
(GI:12232324) [Homo sapiens]
Length = 482
Score = 31.1 bits (67), Expect = 2.6
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 280 DDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQ 339
D P +++ DSG K L++S+ N PP + S N T Q
Sbjct: 252 DSSPPGIALTM--DSGKKKILLLRSKDRDNPDNPPPQPEQHIDT-----NLSRNSTDSRQ 304
Query: 340 NNEYSVSDEEYQGDLFRNLSTPGSS 364
N + V +G L RN S P S
Sbjct: 305 NQKSDVGGRLIKGILLRNDSRPSQS 329
>At5g50670.1 68418.m06279 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 30.7 bits (66), Expect = 3.5
Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 13/192 (6%)
Query: 504 CDVNGCDAAFPSRRSRDRHSSNVDLHRRLLSTNSPDGREQRPAFEVNADLLNKLYADIKG 563
C V+GCD+ F + R + D+H + + +G +QR F + L +G
Sbjct: 101 CLVDGCDSDFSNCREYHKRHKVCDVHSK-TPVVTINGHKQR--FCQQCSRFHALEEFDEG 157
Query: 564 LATTLESLRYNGNEEATQFPSYVTETMKFYSRNLTALQAGMFPRF-GDRSFFPAPFLMGN 622
+ + L + P ++ F+ T Q F G FP ++
Sbjct: 158 KRSCRKRLDGHNRRRRKPQPEHIGRPANFF----TGFQGSKLLEFSGGSHVFPTTSVLNP 213
Query: 623 GFPQAGGPYGVSAGAQSARESMSPLSASSPP---VISPGRLDAANARPREDAKLLFRETS 679
+ + V+A S +S S + SSP ++ P + ++ R AK
Sbjct: 214 SWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFP--ISSSPNSTRSIAKQFPFLQE 271
Query: 680 ESFKKMTSLCER 691
E + SLCER
Sbjct: 272 EESSRTASLCER 283
>At5g50570.2 68418.m06264 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931677;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 30.7 bits (66), Expect = 3.5
Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 13/192 (6%)
Query: 504 CDVNGCDAAFPSRRSRDRHSSNVDLHRRLLSTNSPDGREQRPAFEVNADLLNKLYADIKG 563
C V+GCD+ F + R + D+H + + +G +QR F + L +G
Sbjct: 101 CLVDGCDSDFSNCREYHKRHKVCDVHSK-TPVVTINGHKQR--FCQQCSRFHALEEFDEG 157
Query: 564 LATTLESLRYNGNEEATQFPSYVTETMKFYSRNLTALQAGMFPRF-GDRSFFPAPFLMGN 622
+ + L + P ++ F+ T Q F G FP ++
Sbjct: 158 KRSCRKRLDGHNRRRRKPQPEHIGRPANFF----TGFQGSKLLEFSGGSHVFPTTSVLNP 213
Query: 623 GFPQAGGPYGVSAGAQSARESMSPLSASSPP---VISPGRLDAANARPREDAKLLFRETS 679
+ + V+A S +S S + SSP ++ P + ++ R AK
Sbjct: 214 SWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFP--ISSSPNSTRSIAKQFPFLQE 271
Query: 680 ESFKKMTSLCER 691
E + SLCER
Sbjct: 272 EESSRTASLCER 283
>At5g50570.1 68418.m06263 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931677;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 30.7 bits (66), Expect = 3.5
Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 13/192 (6%)
Query: 504 CDVNGCDAAFPSRRSRDRHSSNVDLHRRLLSTNSPDGREQRPAFEVNADLLNKLYADIKG 563
C V+GCD+ F + R + D+H + + +G +QR F + L +G
Sbjct: 101 CLVDGCDSDFSNCREYHKRHKVCDVHSK-TPVVTINGHKQR--FCQQCSRFHALEEFDEG 157
Query: 564 LATTLESLRYNGNEEATQFPSYVTETMKFYSRNLTALQAGMFPRF-GDRSFFPAPFLMGN 622
+ + L + P ++ F+ T Q F G FP ++
Sbjct: 158 KRSCRKRLDGHNRRRRKPQPEHIGRPANFF----TGFQGSKLLEFSGGSHVFPTTSVLNP 213
Query: 623 GFPQAGGPYGVSAGAQSARESMSPLSASSPP---VISPGRLDAANARPREDAKLLFRETS 679
+ + V+A S +S S + SSP ++ P + ++ R AK
Sbjct: 214 SWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFP--ISSSPNSTRSIAKQFPFLQE 271
Query: 680 ESFKKMTSLCER 691
E + SLCER
Sbjct: 272 EESSRTASLCER 283
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 463 ELEIPIDDENPDRCT--ACGKIFQNHFTLRMHYRNDHLKLLHPCDVNGCDAAFPSRRSRD 520
E + + +RCT CGK F+ H L +H R + C GC F + +R
Sbjct: 1227 ESKAKLQTHKRNRCTHEGCGKKFRAHKYLVLHQRVHKDERPFECSWKGCSMTFKWQWART 1286
Query: 521 RH 522
H
Sbjct: 1287 EH 1288
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 476 CT--ACGKIFQNHFTLRMHYRNDHLKLLHPCDVNGC 509
CT CGK F F LR H + + H C +GC
Sbjct: 140 CTYEGCGKAFSLDFNLRSHMKTHSQENYHICPYSGC 175
Score = 29.5 bits (63), Expect = 8.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 82 GKKRVQCNV--CLKTFCDKGALKSHFSAVHLREMHK-CTVEGCTMMF 125
G+++ C+ C K F D LK H+ +H E + CT EGC F
Sbjct: 104 GERQYVCDQEGCGKKFLDSSKLKRHY-LIHTGERNYICTYEGCGKAF 149
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 615 PAPFLMGNGFPQAGGPYGVSAGAQSARESMSPLSASSPPVISP 657
PA G+ P++G P + + +S SP+S SS P+ SP
Sbjct: 195 PATSPPGSMAPKSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSP 237
>At1g60640.1 68414.m06826 expressed protein
Length = 340
Score = 30.3 bits (65), Expect = 4.6
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 291 KRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTRCSQNNEYSVSDEEY 350
KR K +L K+ + +P T +K N+R R+ R SQ E S +
Sbjct: 182 KRSQKQEKDSLTKNGENEEVEDPETPSQEKQIKGNRRARRE---LRRSQKQEKDSSTKHG 238
Query: 351 QGDLFRNLSTPGSSRADDEPLSLKKQK 377
+ + N TP + E ++Q+
Sbjct: 239 ENEEVDNSGTPSQGKQIKENSRARRQR 265
>At1g55600.1 68414.m06364 WRKY family transcription factor similar
to SPF1 protein GI:484261 from [Ipomoea batatas];
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 485
Score = 30.3 bits (65), Expect = 4.6
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 268 NIRSLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKR 327
+I E N DD+ ED + + ++ V + + E ALDD P KR
Sbjct: 216 SIEDSESEDGNKDDDDEDFQYEDEDEDQYDQDQDVDEDEEEEKDEDNVALDDPQPPPPKR 275
Query: 328 KR 329
+R
Sbjct: 276 RR 277
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1131
Score = 30.3 bits (65), Expect = 4.6
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 277 HNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTR 336
H + P V S + E SNR DD + +G
Sbjct: 592 HFFSPSPASSPVQSVSSSSSRSKDSIGVE-GSNRVNRSLLKDDTPPSSGPSRVSNGTVDE 650
Query: 337 CSQNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPEDL 381
S NE V++ + G NL+ PG S DE +LK++ E +
Sbjct: 651 VSNQNELMVNEFLHDG----NLNFPGGSTVKDEEDNLKRRIKETM 691
>At5g54410.1 68418.m06777 hypothetical protein
Length = 219
Score = 29.9 bits (64), Expect = 6.0
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 266 DNNIRSLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPN 325
+N ++ E+ ++E +DL+ KK+D + + K T + EP ++K P
Sbjct: 95 ENKLKKTQPEKDRAEEEEKDLTEEKKKDPTEEEE---KDPTEEKKKEP---AEEKKKDPT 148
Query: 326 KRKRK 330
+ K+K
Sbjct: 149 EEKKK 153
>At3g22410.1 68416.m02827 expressed protein
Length = 400
Score = 29.9 bits (64), Expect = 6.0
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 630 PYGVSAGAQSARESMSPLSASSPPVISPGRLDAANARPREDAKLLFRET 678
PY A + SA +SPLSA S P SP +A+P K LF T
Sbjct: 264 PYN-PAVSSSAAAPVSPLSARSLPFASPAVRGFKDAKPAACRKSLFPST 311
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.9 bits (64), Expect = 6.0
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 293 DSGDNKTALVKSETSSNRSEPPTALDDKASVPNKRKRKSGNPTR 336
DS D+ ++ + N PP + D +S+P++ R++G+ +R
Sbjct: 55 DSTDDGFVIISAADKENEFAPPPSSDLLSSIPSESARRNGSRSR 98
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 29.9 bits (64), Expect = 6.0
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 273 NIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASV-PNKRKRKS 331
N E+ +EP+ N ++ SG + ++ET NR E D K + P K
Sbjct: 1196 NTEQEEPAEEPQKKEENLEKTSGTVADPITEAET-DNRKEERGPNDSKTEIKPKSETEKH 1254
Query: 332 GNP---TRCSQNNEYSVSDEEYQGDLFRNLSTPGSSRADD 368
G T + E +V E Q F + + G R +D
Sbjct: 1255 GKQDGGTSDAAKREETVDKELLQAFRFFDRNQAGYVRVED 1294
>At5g62230.1 68418.m07814 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 966
Score = 29.5 bits (63), Expect = 8.0
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 12/158 (7%)
Query: 485 NHFTLRMHYRNDHLKLLHPCDVNGCD--AAFPSRRSRDRHSSNVDLHRRLLSTNSP---D 539
N+F ++ H+ L D++G + + P H ++L R LS P
Sbjct: 416 NNFKGKIPVELGHIINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFG 475
Query: 540 GREQRPAFEVNADLLNKLYADIKGLATTLESLRYNGNEEATQFPSYVTETMKFYS----- 594
+V+ +LL+ + G L SL N N+ + P +T +
Sbjct: 476 NLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSF 535
Query: 595 RNLTALQAGM--FPRFGDRSFFPAPFLMGNGFPQAGGP 630
NL+ + M F RF SF P+L GN GP
Sbjct: 536 NNLSGIVPPMKNFSRFAPASFVGNPYLCGNWVGSICGP 573
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.5 bits (63), Expect = 8.0
Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 431 DSGSDLHAMEERLTRARSPSASSDRTDERDVNELEIPIDDENPDRCTACGKIFQNHFTLR 490
D S+ + +R++ E + + ++ ++ D+ +C + H T R
Sbjct: 608 DGNSERRSKRNYRSRSQRDEDGKMEQGEEEESSMDEVTEETKTDKKHSCSRKRHKHKT-R 666
Query: 491 MHYRNDHLKLLHPCDVNGCDAAFPSRRSRDRHSSNVDLHRRLLSTNSPDGREQRPAFEVN 550
++ H + H + + D R R RHS + D H L ++ +G + + + +
Sbjct: 667 YSSKDRHSRDKHKHESSSDDEYHSRSRHRHRHSKSSDRH-ELYDSSDNEGEHRHRSSKHS 725
Query: 551 ADL 553
D+
Sbjct: 726 KDV 728
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.5 bits (63), Expect = 8.0
Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 431 DSGSDLHAMEERLTRARSPSASSDRTDERDVNELEIPIDDENPDRCTACGKIFQNHFTLR 490
D S+ + +R++ E + + ++ ++ D+ +C + H T R
Sbjct: 608 DGNSERRSKRNYRSRSQRDEDGKMEQGEEEESSMDEVTEETKTDKKHSCSRKRHKHKT-R 666
Query: 491 MHYRNDHLKLLHPCDVNGCDAAFPSRRSRDRHSSNVDLHRRLLSTNSPDGREQRPAFEVN 550
++ H + H + + D R R RHS + D H L ++ +G + + + +
Sbjct: 667 YSSKDRHSRDKHKHESSSDDEYHSRSRHRHRHSKSSDRH-ELYDSSDNEGEHRHRSSKHS 725
Query: 551 ADL 553
D+
Sbjct: 726 KDV 728
>At5g52230.1 68418.m06483 expressed protein
Length = 746
Score = 29.5 bits (63), Expect = 8.0
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 336 RCSQNNEYSVSDEEYQGDLFRNLSTPGS-SRADDEPLSLKKQKPEDLLTFRNGEEIAVDT 394
R +++ + + EE DL RNLS+ + S D S++ QKP+ + EE
Sbjct: 187 RVTRSQTKASTTEEVVVDLKRNLSSSNAKSEKDSVNSSVRSQKPKKEAVMKEEEEQDSSE 246
Query: 395 ESLTRVK 401
+ +TR K
Sbjct: 247 KRITRSK 253
>At5g07180.1 68418.m00818 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 932
Score = 29.5 bits (63), Expect = 8.0
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 563 GLATTLESLRYNGNEEATQFPSYVTETMKFYSRNLTALQ-AGMFP------RFGDRSFFP 615
G + SL N N+ + P +T + N++ +G+ P RF SFF
Sbjct: 466 GQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFG 525
Query: 616 APFLMGNGFPQAGGP 630
PFL GN GP
Sbjct: 526 NPFLCGNWVGSICGP 540
>At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 253
Score = 29.5 bits (63), Expect = 8.0
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 16 LDYFMMPRISQPAPQFDFRKLGASFSGRNDE--RSEEQRPIEYQXXXXXXXXXXXXLGLG 73
L + P+ P P R G F+GR+ +E YQ G
Sbjct: 22 LPFIRRPKDKNPKP---IRVFGKDFTGRDFSITTGQEDYTDPYQTKNKEEEEEEDQTGDN 78
Query: 74 VQFVNPATGKKRVQCNVCLKTFCDKGALKSHFSAVHLRE 112
N + +R +C+ C + F AL H +A H RE
Sbjct: 79 STDNNSISHNRRFECHYCFRNFPTSQALGGHQNA-HKRE 116
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 8.0
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 281 DEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKAS-VPNKRKRKSGNPTRCSQ 339
D EDLS N + D ++ + T S+ A++DK+ N+ + + SQ
Sbjct: 555 DSDEDLSDNNDERNRDEIGSVDEESTKSDEEYDDLAMEDKSYWTDNEEEESRDTISMVSQ 614
Query: 340 NNEYSVS----DEEYQGDLFRNLST 360
NN S D++Y +L L T
Sbjct: 615 NNHNEASKTNKDDKYSQNLDLFLKT 639
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 8.0
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 281 DEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKAS-VPNKRKRKSGNPTRCSQ 339
D EDLS N + D ++ + T S+ A++DK+ N+ + + SQ
Sbjct: 574 DSDEDLSDNNDERNRDEIGSVDEESTKSDEEYDDLAMEDKSYWTDNEEEESRDTISMVSQ 633
Query: 340 NNEYSVS----DEEYQGDLFRNLST 360
NN S D++Y +L L T
Sbjct: 634 NNHNEASKTNKDDKYSQNLDLFLKT 658
>At3g06340.1 68416.m00731 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 673
Score = 29.5 bits (63), Expect = 8.0
Identities = 36/180 (20%), Positives = 73/180 (40%), Gaps = 14/180 (7%)
Query: 304 SETSSNRSEPPTALDDKASVP-------NKRKRKSGNPTRCSQNNEYSVSDEEYQGDLFR 356
SE PPT KAS P + KRK N CS++++ S S E + D+
Sbjct: 260 SEPHKRPENPPTVSSSKASFPMPGSTAKHNGKRKRKNVAECSESSD-SESSSESEDDVNN 318
Query: 357 NLSTPGSSRADDEPLSLKKQKPEDLLTFRNGEEIAVDTESLTRVKAXXXXXXXXXAPSVV 416
+ + S ++ + + + +++ E ++ D L
Sbjct: 319 DTTAAQDSGSNGGEQPRRSVRSKQKVSY--NENLSDDDVDLVNDNGEGSGKNIDTEREKE 376
Query: 417 REGLRLRSDLYTPSDSGSDLHAMEERLTRARSPSASSDRTDERDVNELEIP--IDDENPD 474
E + ++ ++ ++S D++ E + + +PS +SD ++ E P I+ ++PD
Sbjct: 377 TEEEKQTNENHSSTES-IDMNGKIE-VDQVETPSGASDSEEDLSSGSAEKPNLINYDDPD 434
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 29.5 bits (63), Expect = 8.0
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 267 NNIRSLNIERHNYDDEPEDLSVNKKRDSGDNKTALVKSETSSNRSEPPTALDDKASVPNK 326
+N +S +++++ D + +KK D N + KS+ SN + D S +K
Sbjct: 1106 SNSKSQSLKKNEGDSNSKS---SKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSK 1162
Query: 327 RKRKSGN--PTRCSQNNEYSVSDEEYQGDLFRNLSTPGSSRADDEPLSLKKQKPED 380
+ N ++ S + S S ++ GD S SS+ D K QK D
Sbjct: 1163 KSDGDSNSKSSKKSDGDSNSKSSKKSDGD-----SNSKSSKKSDGDSCSKSQKKSD 1213
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.131 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,507,954
Number of Sequences: 28952
Number of extensions: 644057
Number of successful extensions: 1808
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1783
Number of HSP's gapped (non-prelim): 53
length of query: 703
length of database: 12,070,560
effective HSP length: 86
effective length of query: 617
effective length of database: 9,580,688
effective search space: 5911284496
effective search space used: 5911284496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 63 (29.5 bits)
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