Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001407-TA|BGIBMGA001407-PA|undefined
         (422 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           28   0.14 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       24   2.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   3.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   5.4  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   5.4  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   5.4  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 20  SLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQN--VNQPTP 68
           ++E      +  ED+ +  T     G ++E ++YN   D+ Q+  +  PTP
Sbjct: 144 AVEYIRSLKQMIEDHENDTTGNSGEGSLQENRYYNNSPDQYQSYQILLPTP 194


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 345 VTPAAVLPQKEDKPKSNQDNRNVNRNVINSHQY 377
           + P+  LP KE+  K   DN+ V   V+    Y
Sbjct: 171 IQPSPTLPSKEEVSKKIDDNQKVG-YVVEGRNY 202


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 398 PAEGYFRFEEPLFQSSVDDPYQRKY 422
           P  G      PL+    D P+QR+Y
Sbjct: 209 PGGGIAAENSPLYWGGADTPWQREY 233


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 334 TDHREKKVDEKVTPAAVLPQKEDKPKSNQDNRNVNRNVINSHQY 377
           ++  +++    V     + Q+E K + +  N N N+   NS QY
Sbjct: 432 SEEEDEETSTTVFSNVEVVQEEAKKEESDSNNNNNKEEGNSCQY 475


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 349 AVLPQKEDKPKSNQDNRNVNRNVINSHQYHDSADSYSKPTHKTFQDVV 396
           ++ PQ   + K  +   + + NVI   + H S+ SYS        D++
Sbjct: 226 SLTPQGRKEQKVLKSLHSFSNNVIAERKKHFSSSSYSSRKRLAMLDLL 273


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 349 AVLPQKEDKPKSNQDNRNVNRNVINSHQYHDSADSYSKPTHKTFQDVV 396
           ++ PQ   + K  +   + + NVI   + H S+ SYS        D++
Sbjct: 226 SLTPQGRKEQKVLKSLHSFSNNVIAERKKHFSSSSYSSRKRLAMLDLL 273


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,725
Number of Sequences: 317
Number of extensions: 4389
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 422
length of database: 114,650
effective HSP length: 59
effective length of query: 363
effective length of database: 95,947
effective search space: 34828761
effective search space used: 34828761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)