Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001407-TA|BGIBMGA001407-PA|undefined
         (422 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   8.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.5  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 321 KDERNFRDLAPAGTDH-REKKVDEKVTPAAVLPQKEDKPKSNQDNRNVNRNVINSHQY-H 378
           K+ER +R       +  R++   E+     ++    +K   N  N N N N  N++ Y +
Sbjct: 51  KNERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHN--NNNYNNNNYNNYNYNN 108

Query: 379 DSADSYSK 386
           ++ ++Y K
Sbjct: 109 NNYNNYKK 116


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 377 YHDSADSYSKPTHKTFQDVVRPAE 400
           Y +S DS+ + T KTF + +R +E
Sbjct: 217 YQNSDDSFHRLTSKTFDNDLRYSE 240


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 355 EDKPKSNQDNRNVNRNVINSHQYHDSADSYSKP 387
           ED    NQDNRN  R    + +  +  +   KP
Sbjct: 117 EDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKP 149


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 255 DNYVPRKPKRIIYYAHLP 272
           DN++P K     YYA +P
Sbjct: 463 DNFLPEKTANRHYYAFVP 480


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 8/31 (25%)

Query: 40  ARDRRGVIEEEKFYNIQADRQQNVNQPTPWL 70
           A D RG++E        A R+ N++QP  WL
Sbjct: 206 AEDARGILE--------AARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 8/31 (25%)

Query: 40  ARDRRGVIEEEKFYNIQADRQQNVNQPTPWL 70
           A D RG++E        A R+ N++QP  WL
Sbjct: 296 AEDARGILE--------AARRSNLSQPFQWL 318


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,958
Number of Sequences: 429
Number of extensions: 6641
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 422
length of database: 140,377
effective HSP length: 59
effective length of query: 363
effective length of database: 115,066
effective search space: 41768958
effective search space used: 41768958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)