GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001407-TA|BGIBMGA001407-PA|undefined
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    28   2.1  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    28   2.8  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    27   3.8  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   3.8  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   6.6  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    26   8.7  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 318 PLRKDERNFRDLAPAGTDHREKKVDEKVTPAAVLP 352
           P++KDE  F + AP      E+  D+K   A +LP
Sbjct: 132 PVKKDEAFFAENAPKNALPAERIADQKAVDAKLLP 166


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 28  NKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGPLLPEEDPTTKISLT 87
           N    DN D +   D    IEE    +++   +QN+     W       +  P+    LT
Sbjct: 644 NTLLADNVDEDIESDHDTKIEELANSDVEPSTEQNIGGDVSWGASTFQSKPQPSFSFGLT 703

Query: 88  NEVKDVFP 95
            + K   P
Sbjct: 704 LDDKSNTP 711


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 32  EDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGP 73
           E+N D+ T  D + V   E+ Y+     +++      WLPGP
Sbjct: 101 EENKDAVTRLDSQDVKRFEETYSQWNSGERSTEYVPVWLPGP 142


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 355 EDKPKSNQDNRNVNRNVINSHQYHDSADSYSKPTHKTFQDVVRP 398
           +  PK+    + +N ++  S Q  DSA   S P     +D++ P
Sbjct: 28  KSSPKNKDSEKRINNSIAESEQVVDSA--LSNPETNANEDIIAP 69


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 18  VSSLELPHD-FNKKTEDNADSETARDRRGVIE 48
           +S L+ P + FNKK+E  A      DRRG+++
Sbjct: 360 ISELDEPFEIFNKKSELFAAVSAGEDRRGLVQ 391


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 98  QTTEKATDRPTGRGARASNENWVKLPYPNREDSHRDDILTPPQPSGELIN 147
           +  EKA +  T +  +A+ EN  + P      ++ D+I  P + S E  N
Sbjct: 317 EEVEKAIEEET-KSVQANEENETEKPSQTESTTNNDNIKAPSESSSEESN 365


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,632
Number of Sequences: 5004
Number of extensions: 92677
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 8
length of query: 422
length of database: 2,362,478
effective HSP length: 75
effective length of query: 347
effective length of database: 1,987,178
effective search space: 689550766
effective search space used: 689550766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)