GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001407-TA|BGIBMGA001407-PA|undefined
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188...    32   0.75 
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773...    30   4.0  
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486...    29   5.3  
09_03_0025 - 11665969-11666417,11666490-11666594,11666667-116668...    29   5.3  
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025...    29   5.3  
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190...    29   7.0  
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340...    29   7.0  

>02_01_0282 +
           1882844-1883413,1883519-1883644,1883733-1883930,
           1884442-1884666,1884844-1885224,1885282-1885989,
           1886546-1886839,1887211-1887709,1887949-1888721
          Length = 1257

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 20/72 (27%), Positives = 30/72 (41%)

Query: 74  LLPEEDPTTKISLTNEVKDVFPSYQTTEKATDRPTGRGARASNENWVKLPYPNREDSHRD 133
           L P+E     I +T   K  FPS    +K++ +P+  GA   NE+       +  + H D
Sbjct: 743 LHPDEYWEAAIDVTICCKKSFPSIVQNDKSSGQPSNEGAEVFNEDGPGKSNKDGPEEHND 802

Query: 134 DILTPPQPSGEL 145
           D        G L
Sbjct: 803 DASEDSNEDGPL 814


>07_03_0797 +
           21575948-21576042,21576140-21576902,21577134-21577327,
           21577667-21577700,21578421-21578485,21579032-21579524
          Length = 547

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 357 KPKSNQDNRNVNRNVINSHQYHDSADSYSKPTHKTFQDVVRPAEG 401
           +P   +DNR V R+V    Q     +++ KP      +VV P  G
Sbjct: 437 RPTRREDNRRVARDVEKPEQQRPEPETWRKPVEPPKPEVVAPRFG 481


>12_02_0483 +
           19546295-19546397,19547163-19547482,19547606-19548611,
           19549890-19549985,19550500-19551551
          Length = 858

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 115 SNENWVKLPYPNREDSHRDDILTPPQPSGELINSRMPRVNFVTQNRGIEASESRHDKEII 174
           S  NW K+P  N ++ +  D    P  S   IN     V FV     IE  E   DKE++
Sbjct: 17  SISNW-KIPKVNIKEIYHVDNSDEPSISDFDINVIELDVGFVI---AIEEDEFEIDKELL 72

Query: 175 QRATRKDDLRTEFVR-PDEQDRNFK 198
           +R  R    RT+  R  +E D +F+
Sbjct: 73  RREIRLPKNRTKTKRYLEEVDESFR 97


>09_03_0025 -
           11665969-11666417,11666490-11666594,11666667-11666856,
           11666933-11667120,11667240-11667571,11667654-11667940,
           11668027-11668911
          Length = 811

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 78  EDPTTKISLTNEVKDVFPSYQTTEKATDRPTGRGARASNENWVKLPYPNREDSHRDDILT 137
           +DP   ++  N  KD  P+ +    A  +PTG  A     N   LP    + +  +   T
Sbjct: 401 KDPDPAMTEQNISKDPEPTNENQPTAESQPTGAHASGDRANPSDLPPTGNQSATTETATT 460

Query: 138 PPQPSG 143
              P+G
Sbjct: 461 QEPPTG 466


>04_04_1023 +
           30201374-30201487,30201601-30202285,30202402-30202506,
           30202561-30203939
          Length = 760

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 11  CAVLMTGVSSLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVN 64
           CAV   GV +++ PHD    TE NA +E A++  GV+  E    I    Q   N
Sbjct: 565 CAVEEKGVETVDEPHD----TETNA-AENAQE-EGVVASEDLLQISETEQDEFN 612


>11_03_0184 +
           11317787-11318198,11318337-11318671,11318756-11319048,
           11319125-11319483,11319549-11319748,11319823-11320012,
           11320084-11320188,11320262-11320338,11320428-11320649
          Length = 730

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 315 PYAPLRKDERNFRDLAPAGTDHREKKVDEKVTPAAVLPQKEDKPKSNQ 362
           P   +RK  R   D+ P+G D     VD   +     P  ED P  NQ
Sbjct: 338 PAPKIRKSSRKPSDIDPSGKDSNPTNVDTS-SSKETGPTAEDHPSDNQ 384


>04_01_0256 +
           3402982-3402984,3403077-3403158,3403307-3403449,
           3403557-3403832,3404136-3404315
          Length = 227

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 320 RKD-ERNFRDLAPAGTDHREKKVDEKVTPAAVLPQKEDKPKSNQDNRNVNRNVINSHQYH 378
           +KD ER  R         REK+ ++KV  A     +E++ +  +D  N+N  V    + +
Sbjct: 87  KKDLERMKRQKEDLDIKLREKREEKKVLQADKTAAEEEQKRLKRDKENLNLKVDTKRKEN 146

Query: 379 DSADSYSKPTHKTFQDVVRPAEG 401
              +  +K   +  +D+ +  +G
Sbjct: 147 RRLEEENKKLQRKIKDLEQKHKG 169


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,548,725
Number of Sequences: 37544
Number of extensions: 545845
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 7
length of query: 422
length of database: 14,793,348
effective HSP length: 84
effective length of query: 338
effective length of database: 11,639,652
effective search space: 3934202376
effective search space used: 3934202376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)