GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001407-TA|BGIBMGA001407-PA|undefined
         (422 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24)                   33   0.33 
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  32   0.76 
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.0  
SB_52675| Best HMM Match : DUF823 (HMM E-Value=5.6)                    31   2.3  
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   3.1  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   3.1  
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)         30   4.1  
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  30   4.1  
SB_23357| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.4  
SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)                29   5.4  
SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)                       29   5.4  
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          29   7.1  
SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)                       29   7.1  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   29   9.4  
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)                 29   9.4  

>SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24)
          Length = 251

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 19  SSLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGPLLPEE 78
           +S + PH+ +  + +N D  T  +R GV EE+      +  QQ + +   W+P  L  EE
Sbjct: 54  NSCKCPHELHVLSTNNNDQNTPEERMGVEEEDPPMLQGSHLQQAMMEGYEWVPRGLTSEE 113


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 32.3 bits (70), Expect = 0.76
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 9/161 (5%)

Query: 19  SSLELPHDFNKKTEDNADSETARDRRGVIEEEK-FYNIQADRQQNVNQ--PTPWLPGPLL 75
           S  + P    +KTE+N +S   +  + +  E+     + A R        P P  P P+ 
Sbjct: 725 SPQQQPQGAQQKTENNVNSPNTKATKPIASEDSSVVAMPAARPVTPKPVTPKPVTPKPVT 784

Query: 76  PEEDPTTKISLTNEV----KDVFPSYQTTEKATDRPTGRGARASNENWVKLPY-PNREDS 130
           P+   T  +          + V P  +  E +        A A  E   KLP  PN +  
Sbjct: 785 PKPVTTRPVEAVRHSPRRDRGVVPPEKKRETSNSEKKKEVATAPTEK-KKLPTAPNEKKK 843

Query: 131 HRDDILTPPQPSGELINSRMPRVNFVTQNRGIEASESRHDK 171
             + I+T  + +  +  S     NF   ++  EA  +  DK
Sbjct: 844 DANVIITDKKDNANVAVSDKKEANFNVSDKKKEADTNASDK 884


>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 80  PTTKISLTNEVKDVFPSYQTTEKATDRPTGRGARASNENWVKLPYPN 126
           PTT+ ++  ++KD+  S Q+ ++A DR T    +   E  VK  +PN
Sbjct: 327 PTTEGTMEKQLKDMKASGQSKKQADDRQTVELLKKPKEYVVKFSFPN 373


>SB_52675| Best HMM Match : DUF823 (HMM E-Value=5.6)
          Length = 190

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 317 APLRKDERNFRDLAPAGTDHREKKVDEKVTPAAVLPQKEDKPKSNQDNRNVNRNVINSHQ 376
           APL    +N   LA      +  +   K  P A   ++ D+ +   +N  +N N    H+
Sbjct: 101 APLCICNKNIEPLASDSIITKRGERKRKKEPGAGEERQTDRREKESNNCIINSN----HR 156

Query: 377 YHDSADSYSKPT 388
           Y+DS   Y+ PT
Sbjct: 157 YNDSGGDYNTPT 168


>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 319 LRKDERNFRDLAPAGTDHREKKVDEKVTPAAVLPQKEDKPKSNQDNRNVNRNVINS 374
           ++KD+  +       + H+  ++ EK+TPA VLP+K+ +P    D R+  R + N+
Sbjct: 558 IKKDDGTYVTTHYQPSPHQSFEL-EKITPANVLPRKDPEPAC--DLRSTERELCNN 610


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 29   KKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGPLLPEEDPTTKISLTN 88
            +K++    SE ++D++   E  K   ++  + ++  QPT   P   LP  +P  K + T+
Sbjct: 1488 EKSKMQTKSENSKDQKTENETSK---VEKAQDKSTVQPTSLRP-LALPTGEPEVKTTTTS 1543

Query: 89   EVKDVFPSYQTTEKATDRPTGRGARASNENWVKLPYPNREDSHRDDILTP 138
            EV  V      T+K     + R    + +N    P+   E   + D+  P
Sbjct: 1544 EVNHVTEKTPATKKPEVPFSQRATETTKKN---EPHLETERKSKKDLTEP 1590


>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 16  TGVSSLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGPLL 75
           TG     L     K+ + N     +  RR   +++   N Q     N         GPL+
Sbjct: 661 TGGKEELLDKQKQKEEKQNKQGPRSPRRRPDSQQKDLNNSQRKHDSNSQAQKGSAAGPLV 720

Query: 76  ---PEEDPTTKISLTNEVKDVFPSYQTTEKATDRPTGRGARASNEN 118
              P+ +   + +   +V+D  P  Q   +     +GRG++   +N
Sbjct: 721 EETPQVEEKPEKAKDGKVEDPLPQRQQNRRRNQNKSGRGSKPPRDN 766


>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
          Length = 653

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 305 RYDYRFRNRYPYAPLRKDE 323
           RY YR  NRYPY PL++ +
Sbjct: 475 RYPYRPPNRYPYKPLKRSK 493


>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 166 ESRHDKEIIQRATRKDDLRTEFVRPDEQDRNFKPVYPRQA 205
           ESR +K    R  R+   +T+ ++P  QD+  +   PRQA
Sbjct: 187 ESRKNKRQAARPKRQATCKTKTIKPQPQDQGKQAARPRQA 226


>SB_23357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 123 PYPNREDSHRDDILTPPQPSGELINSRMPRVNFVTQNRGI---EASESRHDKEIIQRATR 179
           P  N +D   +    P +PS     S  PR+ FV+ +RG+   + S   HD       T 
Sbjct: 25  PLTNTQDVATNVSNKPAKPSNV---SHTPRIPFVSYHRGLGSGKPSPDLHDTRSGHLCTP 81

Query: 180 KDDLRTEFVR 189
             +LR +FVR
Sbjct: 82  LKELRKKFVR 91


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 55  IQADRQQNVNQPTPWLPGPLLPEEDPTTKISLTNEVKDVFPS 96
           I  D   +VN P+P +P P+ P   P +  S++    ++ P+
Sbjct: 432 INNDNVPSVNTPSPVVPPPVAPTSSPQSASSMSQNPTNIDPT 473


>SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
          Length = 273

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 312 NRYPYAPLRK-DERNFRDLAPAGTDHREKKV-----DEKVTPAAVLPQKEDKPKSNQDNR 365
           NR   +P+   +E +  D  P G DH E +      D    P+  +P+  D   ++ D  
Sbjct: 60  NRVNISPVHPPEEPSPDDQLPTGGDHPETEFEAPASDTAPPPSGEIPEVHDDNSNDDDYS 119

Query: 366 N-VNRNVI--------NSHQYHDSADSYSKPTHKTFQDVVRPAEG 401
           N  N N +        NSH   DS  +YS            PAEG
Sbjct: 120 NDTNSNFVDNDDNDSSNSHSGDDSGSNYSNTCDFEESSNGTPAEG 164


>SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)
          Length = 1034

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 19/70 (27%), Positives = 28/70 (40%)

Query: 33  DNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGPLLPEEDPTTKISLTNEVKD 92
           D A+    RD RG   +    N QA+  Q+++QP        + E+       L N  +D
Sbjct: 922 DRAEKHVGRDERGGKPDLHVNNRQAESMQSLSQPPTRSSQQHMAEQRQKVLTELLNTERD 981

Query: 93  VFPSYQTTEK 102
                QT  K
Sbjct: 982 YIRDLQTCLK 991


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 145  LINSRMPRVNFVTQNRGIEASES--RHDKEIIQRATRKDDLRTEFVR 189
            +I S++   N  T   G+E SE   +HD  +++R   K+ L  EF++
Sbjct: 1304 VIGSQLYGANSCTYLHGVEDSEKILKHDSFVVERQEAKEPLVEEFLK 1350


>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
          Length = 306

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 97  YQTTEKATDRPTGRGARASNENWVKLPYPNREDSHRDDILTPPQPSGELINSRMPRVNFV 156
           Y   +K+   P     R + EN      P  E++     +T P P  E+I+  +P  N+V
Sbjct: 192 YDLEKKSRKPPEKDPERFTYENPEYCDIPELENNREG--VTKPAPLYEIISPSLPTKNYV 249

Query: 157 TQNRGIEASESRHDKEIIQRATRKDDLRTEFVRPDEQDRNFKPVYPRQA 205
                +EA    H  E ++ A       T  V  +EQ    KP +  +A
Sbjct: 250 VPREVLEA--KNHTYEELKAAKPIYQTLTPGVSQEEQQN--KPSFQAKA 294


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 14/116 (12%)

Query: 32   EDNADSETARDRRGVIEEEK-------FYNIQADRQQNVNQP----TPWLPGPLLPEEDP 80
            E NA   + R+R    EEE         Y + +    +V Q     T  +P       +P
Sbjct: 1648 ETNAADRSGRERSTGWEEESAPSMANPMYELHSPNVTSVTQQSGHTTKRIPPDTNSSINP 1707

Query: 81   TTKISLTNEVKDVFPSYQTTEKATDRPTGRGARASNENWVKLPYPNREDSHRDDIL 136
              + SLT   KDV          + R   RG+ A+ ++W  +  P  E+ ++++++
Sbjct: 1708 ALEESLTEACKDVITKRTGASVTSSR---RGSWANRKSWDGVRSPEEEEENQENLI 1760


>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
          Length = 592

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 15/141 (10%)

Query: 14  LMTGVSSLELPHDFNKKTEDNADSETARDRRGVIEEEKFYNIQADRQQNVNQPTPWLPGP 73
           L   + S +  HD  K  ED A           + +     ++ D   + N      P  
Sbjct: 459 LQGALESFQQAHDLAKILEDEAAENAVSKAIRDVNDRIAQGVKTDENSDENGEAETKPDE 518

Query: 74  LLPEEDPTTKISLTNEVKDVFPSYQTTEKATDRPTGRGARASNENWVKLPYPNREDSHRD 133
            +P E   +      E KD       TE+A D        A  E   + P P +E+ H+ 
Sbjct: 519 TVPSEQEDSSAVEPTEAKD----EDDTEEAND--------AGKETATEDP-PKKEEDHQP 565

Query: 134 DILTP--PQPSGELINSRMPR 152
               P   QPS E  +   P+
Sbjct: 566 SGEQPSDEQPSDEQPSDEQPK 586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,058,112
Number of Sequences: 59808
Number of extensions: 676943
Number of successful extensions: 1353
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 19
length of query: 422
length of database: 16,821,457
effective HSP length: 84
effective length of query: 338
effective length of database: 11,797,585
effective search space: 3987583730
effective search space used: 3987583730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)