GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001407-TA|BGIBMGA001407-PA|undefined
         (422 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    33   0.015
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   6.8  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 33.1 bits (72), Expect = 0.015
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 29   KKTEDNADSETARDRR--GVIEEEKFYNIQADRQQNVNQPTPWLPGPLLPEEDPTTKISL 86
            +K  D + S+T+  +R   V + ++   +Q + + N +Q + ++  P   +EDP     +
Sbjct: 1582 RKVSDQSSSQTSPSKRKDSVTKRDRII-LQDESEPNTSQYSTFIHEPKHHQEDPPVLKYI 1640

Query: 87   TNEVKDVF 94
             N+V+DVF
Sbjct: 1641 KNQVRDVF 1648


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 343 EKVTPAAVLPQKEDK-PKSNQDNRNVNRNVINSHQYHDSADSYSKPTHKTFQDVVRPAEG 401
           EK     ++ Q E++  K+ ++ + + + +   HQ   + +S  +      Q ++  A+ 
Sbjct: 886 EKAAHKTLVDQMEEEMAKARREVQALAKELAAIHQSIANIESRIESMKSKRQTILMQAK- 944

Query: 402 YFRFEEPLFQSSVDDPYQRKY 422
               E PL Q S+DD  Q++Y
Sbjct: 945 MESIEIPLLQGSMDDIGQQEY 965


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,673
Number of Sequences: 2123
Number of extensions: 19531
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 2
length of query: 422
length of database: 516,269
effective HSP length: 66
effective length of query: 356
effective length of database: 376,151
effective search space: 133909756
effective search space used: 133909756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)